HsaINT0168487 @ hg38
Intron Retention
Gene
ENSG00000244187 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
Coordinates
chr9:136791355-136791777:+
Coord C1 exon
chr9:136791355-136791424
Coord A exon
chr9:136791425-136791710
Coord C2 exon
chr9:136791711-136791777
Length
286 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
ACCCGCCTCTGCCACCCCAGGGA
3' ss Score
7.08
Exon sequences
Seq C1 exon
CCGAGCCCTGCCAACCATGGTGAACTTGGGTCTGTCCCGGGTGGACGACGCCGTGGCTGCCAAGCACCCG
Seq A exon
GTGAGAAGGCCGGTCTGGGACGCGGGCCTCAAACCCCAGAAGCTGACCTGAGCGAGGCGGGGGGCCGGGGCGTGGGGGTGCCCTCGTCAGGGAAGAGTGGCGGAGGCTGGGGGCACTCTCTTGCTAAGGGGCTCAGGGCGTCCGGGTGGGCATAGGGGAGGTGGGACGTGTCCAAGCGCCCAGGGTCTCACTCCTCCACAGCCAGGGTGTGCCCAGAGGAGGGACAGGAGAGGCGGTGAAGGAAGAGGGCAGGGGATCGAGCCTTCACCCGCCTCTGCCACCCCAG
Seq C2 exon
GGACTCGGGGAGTATGCCGCATGCCAGTCACACGCCTTCATGAAGGGCGTTTTCACCTTCGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244187:ENST00000290079:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCCTGCCAACCATG
R:
GACGAAGGTGAAAACGCCCTT
Band lengths:
132-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains