RnoINT0152191 @ rn6
Intron Retention
Gene
ENSRNOG00000028254 | Tmem141
Description
transmembrane protein 141 [Source:RGD Symbol;Acc:1561492]
Coordinates
chr3:2845223-2845593:-
Coord C1 exon
chr3:2845518-2845593
Coord A exon
chr3:2845290-2845517
Coord C2 exon
chr3:2845223-2845289
Length
228 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
CCCCCACCCTCCAATTCCAGGGA
3' ss Score
9.82
Exon sequences
Seq C1 exon
CCTTGGCGGAACCTGACCAACCATGGTGAATCTGGGCCTGTCCCGTGTAGATGACGCCGTCGCCGCCAAGCACCCG
Seq A exon
GTGAGAAGGTTGGCCTAGCTGACCTGAGGCAGAGTAGAGGCAGGGGGAGCACGGTCAGGGAGTGGAGGCACCCTCCTGCCTTAGAGATAGGGCACGCTAAATGGGTTTAGGAGAGGGTGGAATATATCCAGCCCCCATTCTCCCTCGCCGAGGCCAGGTGATGCCTAAAGGAAAAGCTGGAGGAAAGAGAACTGAGCCATAAACACGTCCCCCACCCTCCAATTCCAG
Seq C2 exon
GGACTCGAGGAATATGCTGCCTGCCAGTCGAACGCCTTCATGAAAGGCGTTTTCACTTTTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028254:ENSRNOT00000067479:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCGGAACCTGACCAAC
R:
TGTGACAAAAGTGAAAACGCCT
Band lengths:
141-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]