HsaINT0168489 @ hg19
Intron Retention
Gene
ENSG00000244187 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:28211]
Coordinates
chr9:139686399-139686810:+
Coord C1 exon
chr9:139686399-139686482
Coord A exon
chr9:139686483-139686702
Coord C2 exon
chr9:139686703-139686810
Length
220 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
3' ss Seq
TTCCATTTCCTGCTCCACAGTTG
3' ss Score
8.38
Exon sequences
Seq C1 exon
GCACCGGCATGGCCTTTGGCTTGCAGATGTTCATTCAGAGGAAGTTTCCATACCCTTTGCAGTGGAGCCTCCTAGTGGCCGTGG
Seq A exon
GTGGGTACTCCAGGGCCCCTGCCTGGGCTCTTTGAGGGGTGGGTTTCTGCTAGGGTTGGGGCTGTGGTTCTGCGTCCCTGACTCTGACATGGAGCCCCAGGTCTCGGCGGGAGCCCCACCTGAGCCCACCCACCACGTCTGTCAGGAAGTAGCCTGTGCCCGGTTCTCTTAGCCTGGGAAGCACAGAGGCCCCAGCCCTCTTCCATTTCCTGCTCCACAG
Seq C2 exon
TTGCAGGCTCTGTGGTCAGCTACGGGGTGACGAGAGTGGAGTCGGAGAAATGCAACAACCTCTGGCTCTTCCTGGAGACCGGGCAGCTCCCCAAAGACAGGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244187-TMEM141:NM_032928:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(29.2=100),PF140121=DUF4229=FE(59.6=100)
A:
NA
C2:
PF151101=TMEM141=PD(29.2=75.7),PF140121=DUF4229=PD(23.4=29.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGGCTTGCAGATGTTC
R:
TGTGCTCCTGTCTTTGGGGAG
Band lengths:
180-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)