RnoINT0152193 @ rn6
Intron Retention
Gene
ENSRNOG00000028254 | Tmem141
Description
transmembrane protein 141 [Source:RGD Symbol;Acc:1561492]
Coordinates
chr3:2844578-2845071:-
Coord C1 exon
chr3:2844988-2845071
Coord A exon
chr3:2844686-2844987
Coord C2 exon
chr3:2844578-2844685
Length
302 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACCTCCCTCCTGTACTCCAGTTG
3' ss Score
7.55
Exon sequences
Seq C1 exon
GCACTGGTGTGACTTTTGGCCTGCAGATGTTCATTAAGAGGAAGTTTCCATACCCTGTGCAGTGGGGCTTCCTGGTGTCTGCCG
Seq A exon
GTGAGTACTCCACGTCGGGTGCCTAAGCCCTGAAATGCATCCATGGCCAGTGACTCTACAGTGTTGGTGTGTTTCCAATAAAAACCAGACTGTGGGACTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAACCAGACTGTGGTCCAGCCTGTTTGCCCAGAAATAGCTTATGCCAGGTCCCCTTCCAAAATGTACAGAGGCTGAGGTCCCCAACACACCTCCCTCCTGTACTCCAG
Seq C2 exon
TTGTAGGATCTGTGGCCAGCTACAGAGTGACAAGAATGGAGTGTCAGAAATGCAGCAATCTGTGGCTCTTCCTGGAGACCGGGCAGCTCCCCAAAGGCATGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028254:ENSRNOT00000067479:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(29.2=100)
A:
NA
C2:
PF151101=TMEM141=PD(29.2=75.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTGTGACTTTTGGCCTG
R:
CTGTGCTCATGCCTTTGGGG
Band lengths:
190-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]