HsaINT0169628 @ hg19
Intron Retention
Gene
ENSG00000187054 | TMPRSS11A
Description
transmembrane protease, serine 11A [Source:HGNC Symbol;Acc:27954]
Coordinates
chr4:68776019-68780448:-
Coord C1 exon
chr4:68780306-68780448
Coord A exon
chr4:68777222-68780305
Coord C2 exon
chr4:68776019-68777221
Length
3084 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TCTTATGTTTTTATTTTTAGGGT
3' ss Score
11.86
Exon sequences
Seq C1 exon
GGGAATCCCAAAATGATCTCCGAGAAGCCAGAGTGAAAATCATAAGTGATGATGTCTGCAAGCAACCACAGGTGTATGGCAATGATATAAAACCTGGAATGTTCTGTGCCGGATATATGGAAGGAATTTATGATGCCTGCAGG
Seq A exon
GTAAGTTGGAGGGATTTTTTTATATTACTAACTCAAAAATTTGTATCTGGCTCAGAATATATTATATGTTCTTTACATAAGGACAAAACATAGATATCATGTCAGCTCAAAAAAGTTACAAATGCAAATTTCACAGCACAAAATACTTTTAAATGTTTTATTAAGATAAATGAAGTAAGAGTTTCTCTGATGCTATCAAACAAACAAAATTAGAATTTCTTAACCAGAAATCCAAAGATTAATAAAGCAGTTTATTTTCTCAAGCGGCTCACATTCAAGAAAGAAAATAATCATAAACAGAGAAGTATAAAGTGATGTTATGAATAATATAATGAAAAGCAAATATTTTTCTTGAAGGAAACATTTTTGGAACAAGTATCAGAGAGATGAGACGTAAATAAGGCCTGAAGAATAAATAACATCCAATTTCAGAATAAGAAAATAATGTTATAGAAAAGACAAAAAGCATAGCCAAAATTATGAAGGTGTGAAATTACAATTCATATCTGAGGGAACTCCAAGTAATTGGTTGGGTCTCAGCATGAGGAGGATGAGAAGAGAAACAAGTAGATAACCATGAGAAGGTGGATTAGGCCATGTTGTGATTCCATGGGCCCTCCCCAGTGCCCTCATCTGCCTTCTAACATGGATGTTTTCCAGCGAAGGTACGTTTCTTCCTGGAGACACTTGCTTTTTAACATGAGATACTTTAGAACTCTAAGGAGGCCACTCTATGTGGAAATGATGGAATGGTATTGATATCAGGTGGCAGAAAGTCCTGTCCAGAGTCCCACAAACTGTACCACATGTGCGACCTCTATCAGAAAAGGAGCAGGGACCTATGTGACATAGAGGCTGGGCAAAAGCAGGATCTGGTCCACAGCCAGCCTCGGTTGCTAATAATGTGGAGGGAGGCAGGCAGAATTTAGGGATTCCAACAAAAGGTCCATACCACGGGGAACAGGTGGAAGGTGCAGGAGTCTTGGAGCAGACAGGACCGGGGAATTCAGGTGAACCATGACATTACTGAAAAGCCTTAGGAGGGATTGGTGGTCATAGAGATGCTTCACTGGATTGGGGAGCAGAGGTAAACTTGCTGCCTAACTGTGCAAAGTAAGTGATAAAACAAGGCTTTAGTCATAGAAAAATACAGTAAGTTATCAGGGCAGCGGTTCAGGTACAAGGATCCAAGACAGGAATACAGTGATTGTAATTGGGGCACATGGTGAGGGGCCTAGTCTGATACAACAGAAGTGCAAGCACCACCAACACCTCGTCTTTCTCCATAAGTCTTTCTCTCCAGAGCCCTCATGACCTAATCACCTCTTCTTAAGTCCCATCTCTCAACACTATTGTATTGGAGATTAAGTTTCCCCAACCTATGAACTCTTGGGCTCACATTCAAACCATAGCACCACCCAGCACAAAAGCACAGAGCTTCCAATCTGGTTTCTAGCTCCATACCCTAGAACCAAACAGTAAGAATCACCTCTGGAAATGTAGCAATAATATAATCATAATTTTTAAAATCCAGTGGAAGGATTGGAAGATAAAATCAAGGAAATCTCTCAGAAAGAACAACAACAACAAAAAAGACACAGAGGAGAAAAATAATCAGAAAAATTAAGAAAACTAGAGGATAAGCTCAGGAGATCCAACACCAAATGAATAGGAGCTCTGAAAACATAAAACGCGAGTGTACAATATAAAAAAAAATAAAGAATGCTCCTAGTTCTGAAGCTTACATGCATCCTATTGAAGAAAAGGTCCAAGTAGTGCTGGGCACAATAAATGAAGTACTTCTTTCCAAGACATACCATCATAAAGGGTCAGAAGCCAGGGATAAGGAGAACAATCTTAAAACTTTGAAGGAAGAACCATCAGAACTACATAGAACTCCTCAACAGTAACTCTAGAAGGTAGACGATGGTGGAAAACACATTCAAATTTCAAAGGGAAGATTATTTCAACCTAGATTCCTACCCATGCTAACTAAATATCAACTGTGAGGGTGGAATTAAGAAGTTTAGACAAGCAATGACTGAAAAAAATGTACTTCTGATACCCTACTTCTTAGGAAACTACTTGAGAGGGTACCTCAGCAAAATGAGGGAATAAATCAAGAAAGTGGAAGACGTAAGACCTGAAACTGTTAGTCCAACACTAAAGAGTGGTATCAGATAATCCCAACACCATAGCTCTGCACCAGGCTTAAAGTAACCAGCTCGAATTTGAGCAGAAGTAAGAAAAGATTGTGTGTATGTGTATGTGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTTGATATGGTGGAACAGCTTCAGAGGAAGTAAAAGAACTAACAAGCTATCTGATGTCCTTGAACATTAGTAAACATTATTGTGAGGTGTTGGTAGATCTTTTGGAGCATTCAGCATTTACCAGGTACATAGAAAACTATCCACATGAAAAAAAGAGTTGTGTTATTAATTCTAGGAAAGCAAAAAAAGATTTCTGTAATCCAAATATGTTACTTGACTCTTCAATTAATAAAATTTACACACTGGTACTAAATGTAGGCTGTTAATTTAACCAAAAATAGAGATGCTATAATGTAAAGATGTGGTGTGGAAAAGTTGCAAAGAAGTTGTAAAACAACTAAATCCCTAACTACGTAAGAGAAAATAAATATTTACTGTCTAAACCTAGAAGCTGTAATTTGAGCATATTATCTAGTGATAAGGAGTTAGATACTATAAGAAATCATTAAACAAGCATGAAGTGGCTACCTCTTGGAGAACAGCTTGCGTGAGGTAACATGGGACATAACTGCTTTTCAAGCCTCTTCATGTTTTTTCGTTTTTGCCTTTTTTAACTAAGTGCTGTTTACTCTAACAAAATAAATTTTATTTTTTAAATGTGAAAGTTGAACCTTAAGGCTCTTTGTAATATTAAAATCCATGTCTCAATTAATTATTCTGTGTTGATAGTCTATACATGTACTGTCTAGTAACAAAATATGTGATTCATCAAAATATCTTAAATAATGAGCTTTATGTTTAGCTAATTTTCTTTCTTTTTTCTTATGTTTTTATTTTTAG
Seq C2 exon
GGTGATTCTGGGGGACCTTTAGTCACAAGGGATCTGAAAGATACGTGGTATCTCATTGGAATTGTAAGCTGGGGAGATAACTGTGGTCAAAAGGACAAGCCTGGAGTCTACACACAAGTGACTTATTACCGAAACTGGATTGCTTCAAAAACAGGCATCTAATTCACGATAAAAGTTAAACAAAGAAAGCTGTATGCAGGTCATATATGCATGAGAATTCAACTATTTAGTGGGTGTAGTACAACAAAGTGATATTAAATTACTGGATCTAGTAACATGAAACACACAACGTAAGTTATTTAGAATCACTTTAATCAACCAATAATCCTTAGCCAATTTATAAGGGACTTTTATTTGTAAAGTAATGGATCTGGCTTGAAAAATACGGTAGAGATACTTAGCTCTTTAAATCACGAATGTTGAAGTACCAGTGAGACTCAATACATATTTTTGAAGATAGTCCATGGGATTTTTAGAATGTCGTTGTCAAGGGTCTCCTTTTAACTGAGAAACTTTTTGAACTCACAAAGTGTTCAAGAAACCCTTGTATAATTCCCTACATTTCTCTCGAGCTCACAAATACTTTTTTTTCTTTTTCCTTATTCAATCAGATTTTCCAAAGTACCTTTCCACCATAAGAAATGAATTTTCTACTTCTACACCCATTTGAGAGACACCAATAAAAGAAAGTCATATGTAGGAAACAAAGTCTGATAGTAAAACAAGCCAGAGATCTTCTAACTTTTTTTAGTTATAAAACCTCTAATTTTTGGTGACTTTTCTACACACACACACACATACAGTCACATAGATATTCTTATCCTACAGATATAATCAGAAAAATCCCGATTAATGAATTATATATAGATAGATAGAGTGATTAGTTAATCAAAACTATATATTTGTTAAAAATTTGGGAGAAGGTGATGGTAATTTCATTAGTCCCAAAACACCGGCATAAGAAATTTGACATTTCACAGATGCACTTACATATTTTGACCACAAGGGGGAAATTTTGTGCATTATTATTGTAGGGTTAAATGCCTGAAAAAAATAAGCATTTACTAATACCTTGAAAAATCAAAGAACATTATGTTCCTCCGTAGCAAGAAAAATTTTATGCCCTCGCATTGCTACAGCCAAATAGCTTATAAGGCTTATGGCAATGTCCCAACTATTGCAATCATAAAACCCTAGTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187054-TMPRSS11A:NM_001114387:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)