MmuINT0162612 @ mm10
Intron Retention
Gene
ENSMUSG00000072845 | Tmprss11a
Description
transmembrane protease, serine 11a [Source:MGI Symbol;Acc:MGI:2684853]
Coordinates
chr5:86410410-86414619:-
Coord C1 exon
chr5:86414477-86414619
Coord A exon
chr5:86411924-86414476
Coord C2 exon
chr5:86410410-86411923
Length
2553 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TTTTTCTCGTTTATTTTCAGGGT
3' ss Score
11.14
Exon sequences
Seq C1 exon
GGGAATCCCAAAATGAGCTCCGTGAAGCCAGAGTACAAATCATAAGCAATGACATCTGCAAGAAGCGACACGTGTATGGCAATGAAATAAAACGTGGGATGTTCTGTGCTGGATTTCTGGAAGGAAATTACGATGCCTGCAGG
Seq A exon
GTAGGTTGGAGAGAAAATAATTCAAAGTCACTAAGTCAAAATCTTTCTGCCTACCCCAGGAAATACTCTATGTTCTTTACAGTCACGTGGGAAACAGACACGCTGACATTTCCAAATGTGTTAGTATCATAGCACCTAAGGACTCTTAAGTGTTTTCTTATTGAACAACCTGAAACAAGCAAAGGCTTCTTTGACCTTATCAAACACAAAATGTAAATGTCTTAGTCCAGAAGCTCTTAGGATAAGTCTTGTAATGTTGCCTTACACAACAGGCTCACAAATTACAAAGGCAGCAATCATGTACAGTGAACTGCGGAAGCTCTAGAATATAATAGAAAAGAAGTAGTCTCCCCTTCAAGAAAATGTTTGTTTTTTTTTTTTTTTGGAACAAACATCAGAGAAATGATACTTTAATGAGACCTAAAAAATAAGTAGCACTTATTATGCAGTTACAGAAAAAGAAAGAGAGAATACTTACAACTGTGAAGACGTCTACATTTATAACATGACCAGTTACTGTAATTTGTAGTCGGTAACCCCAAAAAAGCAGAAGCAGAATGGCAGGTGAGAGGGCTATTTAATGGGGTGCAAAGCTTGATTAGGTATACCCGTCAGTATCCTACTGTTGTTCTTCATGACATCTCTCCCAGTCTTCCAGAATCTGTGTGTTGTGTGTGTTTTCTGATGAAGATCTGAGTCTGTTTCTTTCCACATGCAAGAATTCTTTTGAGATGAAACCCTTGTAAATATCAAAGAGGTAAATCTACTCGGTGAAATGATGAGACTTTTGGTAGCATGGGGTGACAAAAGGCCCTGCCCACAAATCCACAAATGACACAGAATGAACAAGTGTTAGGGTGGGGGAGGAAAGAAAAAGAACAAAAGTTTGTAACACACAGGTCAGGCCAGAGTGGGATCTAATCCATAGCTAACCTCTGTTGCCAAGAGTGTGGAAGGAGACCGCTATAATTTAAGGAAGAGATGGGAAGAAGTGAGCGGAAGCTCACCAGAAGGCTTGGAGCAGACGGGGGATGATAATTCAGAGACCCGTGGAAAGATTTGTGGACCAGAGGACTCACTGGAATTGGACTCAACGAAGTATAAGAAAGCCCCTACTCATAGAAAAAGTCGCTGAAAAAAAGTGGCTCAAGTGCTGGAGAACAGGCATGGTAACCCGGGTACATGATCAGGGCTTCAGAGCATCTGATAATACACAATTACAAGCATCCATGTAGCATATAATTTTAAAATGCACACTTTCTCTTTGCCCAGTGAAGGCAACGGCAGTCTCACCCAGCACCGATGGCTAGATTTCCCAAGCCAATCTGGTCTCAGTTTGTTCCCTGCCCAGTGCCAGCTGTCTCACTCAGCCCCCCACCCCCACCCCCCACCCCCGCTAGCTTCGATAAACCTCTAATGGCTGTTCTGCAGCTATGCCCTTTCTCCTGCTCACCTTAGTCACAGGGGATGGAAAACACCAGACAGCTACAAACTATCAGTCCCTGGGAATTACAAGTCTGTTATTTCCTATTTGCTCCACAGCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTCCTCTTCCTTTTCCTCTTCCTCCTGGGACCCAGAAATCCAGCCTTATTCTCTGCCTAAGGATTGGCTTCTTGCTGTCCTTATTTCCGAGTTAAAATGGGGAAGGTTCACATGGAATCACCTGACTATGTGAACCACTCTTAGTCGTGGCAGCCCCTTTTAAGGAAGCAGAATTAGCACCGAAATACAAACAGCACAAGGACAATCCACAACACACAAACATCAACTTGGTTTCCTTATATCACCAAATGCTTATCTAGAATTCAATAAATGTCCCCTAACATAGAGGAGGGGAAGAAGAAGGAGAAAGAGAACGAGTAAAAGTGAGGATTTCTCCACCAAACATCTCAGTAAACAAGATCCAAGCACAAACCAAAAAGCATCAGAACTGTTGATGAGAAATCCCGCCTGCCAAAAAGTAAATGCTCACAACTTAGTGCAGATTTGCAATTTTGTTTCTGGTTGGAGCTCAGCTAAGAGTTTGATCTAATAAAGATTCCAGTTGTAATCACTACCAGGCACACTGGGGAGGGCAGGGTTGGACGTGGTTCTTAAGGTGATATTCAGATCACTACATAACATACTAGGTGAGAGAAGCTATCTCCATTTGACAACAGATCCCAAAGGAAAAACTACTTGCCTCAACAGAGTTTCATTGGTATACAAACCACACTTCAGGTCAGATCTCATCTCATGTCCAGCAGTAGATGGACAACACAAAATGACCTCAATTGTAATTTGGAGATTTTTTTTTGTCTCATATTGCTATGTTTGAGCATTTTCTACTGTACTGGTCTAATGCTTGTATGTATTGGGCATTACTTTCTTATTTAGTGTTGGTAATCTATACACATGCTTAGAATAAATAAGTGATTCATCAAACTTTTGTAAATGATAAACTGTTTAGCCAGTTGTTTTTCTCGTTTATTTTCAG
Seq C2 exon
GGTGATTCTGGGGGACCATTGGTTATAAGAGACAACAAAGATACCTGGTATCTCATTGGAATTGTGAGCTGGGGAGACAACTGTGGTCAAAAGAACAAGCCTGGGGTGTACACACAAGTGACTTATTACCGACACTGGATTGCTTCGAAAACGGGTCTCTAACTCGCTACAGATAGATGTTAAAGAAAACCGTAGCGTGTCGGTTATATGCATGTAAGAATTCAGACATCCATTTGGTGGCATTGGCACAATGAAATGAGATTAAATGGCTGGACCTAGCAATGTGAAACACATGATTTATTTCAGAATCGCATATTTGTGAAGGTGTAGGCTGATTTATCATTGAAAAATGCAGTAAAGATCCTTCATCTCTTTAAAGCAAGGGTGCATGGGATGCATTATGTGGTTTTACAGATGGCCTGGGAGAGTTTTAGAATGTGTTTTTTCTGGGTACCCTTCAAGTAAAAAACGCTTTGAATCTTCAGAGACGTCAAGGTGCTCATACAAGTCCCTTTGATTTATCTAGAGTTCATACACATCTTTTTGTCTTCTTTACATTTCTTCTAGATTTTCCAGTTTTTTCCACCACAGGAAATAAGTTTGTTACTTCTAAATGCATATCAGGGAATTTAGAAGGGACGATTATATCAAAATTTGGTGGCAAAATAAAGTGAAGTTAGTTTAAACTTTGCTGGGAATTTTTTCTGTTTTTTTTTTTATGATTTTTAGAAACACTACCATGTATACAACACTCATATCACCATCCCGATGGCATAGAGATACATAAGAGAAATACTGATTAATGGTACTTGATCAATATATAATTTTTATCCTGAAAAATTGACAGGGATGATGACTGAGCTGTTCCAGGATAGGTGTACAAGATATTTTGAATGCGCACTTACATATTTTGGTCGCCAGGGGGAGATTTTTGTCCAGCATTATCTTAAGGTCAAATAATGGAAAACTACAGGGAATTTATGTCCAGGAAGTAAAAACAAACAGACTCATGAAGGCATCAGGAAAGTGAAACATTGTTGCCCACAATAGACCTAAAGAAGGCTTTATTGGATAATTTCTTGCCTGTGAGATGTCTAAATTTTCAAGTTAAGGTATATAAAACAGCTTAACAAAGTTATATGCAATTTGCATCCTTAGTTGTCAAATTCACATGCCCTCTTTCCTTGCAAAGTTTGTTTATGGCTGCTGTATTTATTGAATCGGTGTACCTAGGACATTTCTCACTAAGTGCTATTGGATCAGTTTTCAAACTAGGAAACTCTTACTACCACTACTCACTTCAAAGCAAGGTTCTTTCTTCATATATGTAATAAATTCTCACATAAATTTTCTGCATTACAGTGGTTAACTATGATTGTGTTTCTAATGCTAAGATTCAGAAAGTGGTCTTAGAGTTGTAAATAATGCGCTCCAAACTGTCTGCTGCAGCATTTCATTCATGGTTGTATGGGAACAAATAATGTTTTAAATCTAATAAAGTTGGTGATCAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072845:ENSMUST00000101073:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types