RnoINT0153278 @ rn6
Intron Retention
Gene
ENSRNOG00000046764 | Tmprss11a
Description
transmembrane serine protease 11A [Source:RGD Symbol;Acc:1596322]
Coordinates
chr14:23281056-23283092:+
Coord C1 exon
chr14:23281056-23281198
Coord A exon
chr14:23281199-23282933
Coord C2 exon
chr14:23282934-23283092
Length
1735 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TTTCTCATGTTTACTTTCAGGGT
3' ss Score
10.95
Exon sequences
Seq C1 exon
GGGAGTCCCAAAATGAGCTCCGTGAAGCCAGAGTACAAATCATAAGCAACGACGTGTGCAAGCAGCGACATGTGTACGGCAATGAAATAAAACGCGGGATGTTCTGTGCTGGATTTCTGGAAGGAATTTACGATGCCTGCAGG
Seq A exon
GTAGGTTGGAGAAAAAATAATTCAAAGTCACTAACTCAAAATCTTTTTTTTTTTTTTTGGCCTAGCCCAGGAAATACTCTATGTTTTTTATAGTCACATGGGGCATGCTGACATCTTCAAATGTGGTAATGTCACAACACCTAAGGACTTCCAAGTGTTTTATTATTGAAAACCCTGAAACAAAGGTTTCTTTGCAACCAAACACAGAATGTAGTTCTCTTAGTCCGGAAGCTCTCGGGATAAGAGTCTTGTAATGACATCTTACATTCCAACAGGCTCACGAATTACAAAGGCAGCAACTGTGTACAGTGAACTGCAGTGCTCTAAGAATGTAATGGAAAAGAGATCGTCTCCCCTTCAAGAAAACGTTCTCAGAACAAACATCAGAGAAATGATGCTTTACTGAGACCTAAAGAATACGTAGCACTTATACAATTACAGAAGAGGGAAGAATAACTACAACTGTGAAGATGTGTACATTTATAACATTACCAATTACTATAATCTGTAATGGGCAACCCCAAGCAAAGCACAAGCAGAAGGGTGCAAAGATTGATTAGGTATACCTATCAATATTCTACAGATCTTTACAGTGTTTTCCCCAGTCTTCCAGAATCTGTGTGGCACGTATATTTTCTGACAAAAAAAAACCCGAATATGTTTCTTGCCATATCCAAACATTTTCTTTTTGAGATGAGACCCTTGCAAACATCAAGGAGGTCAATCTGCACAGTGAAATGAGAGTGTTGGTGGCATGGGTTGACAAAGAGATGACACAGAACAAACTGTTGGGGGAAAAAAAAGAACAAAAATTTATAACACCCAGGCCAGTCCAGAACAAGATCTAACAGATAGCTAACCTCTCTTGCCAAGAGTGTGACAGCTATAATTTAGAGATCCAAGGAACAGGAAGGAAGAGGTGAGCGGAAGCTCATCAGAAGGCTTGCAACTGATGGGGATGATAATTCAGAGATCCATGGAAACATGTGTGGCTCAGAGGATTCACTGGGATTGGATTCAAAGAAATATAAGAAAGTCTCTACTCACAGAAAAAGTCATTGGAAAAGTGGCTCAAGTGCCGGAGAACAGTGATGATAATGAGAGGGAGAGGGAGATGGTGAAAGAGCAGGAGAAAGCAAGAGTGAAAGTGAGAATTTCTCCCCCAAACATCTAGGTAAACAAAATCCAAGCACAGACTTGCTGATGAGAAACCCTGTCTTCCAAAAAACTAAAAAGGTTCTCACAACTTAGTGTGCAGATTTACAATTTTGTTTCTGGTTGGAGCTCAGTTAGGAGTTTGATGAAATAAAGATTCCCTTTGTAATCACTTCCGGGCAGTGGAAAGGGCAGGGTTGGAGGTGGTTCTTAAGGTGATGCTCAAATCACTGCAGAGCATAGCGGGTGGGAGAAGTTATCCTCATTTGACAACAGCTCCCAACGGAAAAATTCTCATCTCCAGCAGAGTTTCACTGGCTCTACAAACCACACTCGAGCCCCATGCCCAGCAGTAGAGAGCCAACACAAAACAGCTCAATCGTAATTTTGGAGACTTTTCTTTTTTGAATCATGTTTGGGCATTTTCTACTGTACTGGTCTTTTTCTTGTATGTTATGGGTTTTATTTACTTATTTGGTGTTGGGAATCTATACACACACTTAGAATAAACTAAACGGCTCATCAACTTTCATAAATGAGAAACTGTGTAGCCAATTGTTTTTCTCATGTTTACTTTCAG
Seq C2 exon
GGTGATTCTGGGGGCCCATTGGTTGTAAGAGACGACAAAGATACCTGGTATCTCATTGGAATTGTGAGCTGGGGAGACAACTGTGGTCAAAAGAACAAGCCTGGGGTGTACACTCAAGTGACTTATTACCGACGCTGGATTGCTTCAAAAACGGGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046764:ENSRNOT00000075414:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=86.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTCCCAAAATGAGCTCC
R:
GAGACCCGTTTTTGAAGCAATCC
Band lengths:
302-2037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]