HsaINT0169649 @ hg19
Intron Retention
Gene
ENSG00000153802 | TMPRSS11D
Description
transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:24059]
Coordinates
chr4:68686594-68691592:-
Coord C1 exon
chr4:68691450-68691592
Coord A exon
chr4:68688217-68691449
Coord C2 exon
chr4:68686594-68688216
Length
3233 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTCATTCTGTTTTTTTACAGGGT
3' ss Score
10.61
Exon sequences
Seq C1 exon
GCCACACAGTTCCAGAGCTAAGGCAAGGACAGGTCAGAATAATAAGTAATGATGTATGTAATGCACCACATAGTTATAATGGAGCCATCTTGTCTGGAATGCTGTGTGCTGGAGTACCTCAAGGTGGAGTGGACGCATGTCAG
Seq A exon
GTAAGCTCAAGACAATCTCATCCATGTCATCATCCAAGAAGTGTATAAGCACTTCCTAGTATGTGATAATGTGATAGACATAAGTGTAACAGTTACAATACACAGCCCTGTTCCTCTAAAATTTATAATCTAGATTTTAGAAATAAATTTTTTTATGAATGAAGTTTATCTATCATGAAAGCATTAACTCTGAGAGGCCAAATTACAGAGTAGTTAACCATCCAAAGCTCAAGAATCAGAAAGACCTCGATTTGAATTCCTTAACCTCTATTACCAAGTCTCTAACTAAAAGCTGGGGATAATCATAATAGCACCTAACTTTTTGGGTACTAAGAAAAGTTAAATGAAGACTAAATATATCAGGCACATGGTAAACAACAAAGAAATCTCATCTATTTCACTATTATTAATGTAGACCATGGTCACTCGTGTTAATAACTTTAACCTCAACCTTTTAACTGCTGTGAAGGATTAAATAAAAAATTAATCACTATATTATAAAAATTAATTGATATATAATAAATGAATTTTAAGAGATACGTAATAATTCATGGACTCCTTGAAGATAGAAAATTTATACAAAATCCTAGTAATTTGAGTCACAAAAGCTCCTACAATAATGAAACAGTATGAATGAAAAAGAAAAGAAATAACTATTATATTTGGATCTAGCCCATAATTTTTAACCAAATGCACAAAAACAAACAACAAATATGAAATTCTCACTGTAAAGTGATTAAAATCAAATTTGAATTCTAAAATTTTAAATTAAATTATCTAAACATAATTGATGCAGTTATATGTTTTAATAGGTTTTGTTCACATATCTGAAATCCAACTCCACACAGTAGCAGGAACAGCTGGTGTCAGAAATTAAATATTCTTTTAGTCTGGAGTTTTAAAAAATCAATCTGTTTACTTGAGTAATTTGTTGCTGTTTTCATGGGTGAATTGTATACAGAAGGATAAGAATTATTCTTCGCATCAAAAGGTCACTGACTTTCATATTTAGTGCTCATGGTCTTTAAAAAGTGGATAAAAAGTAGTTCTCACATTTCATGGAAAGCCCCCAATCCATGAGCACATTTCCCAAAATGAAACATTTTTATCAACTGCAAGTTGTGTGTAGGTGGAGATTTGTTTTTCAATTGTCAAGATACTGTTAATTACCCAGTCCTTTATCTCCTTTTGGTGGAGATGTCTCTGTGCTAGGAAACCCTTCTTGCTCTCCTTCCTGTTTCTCTTTTACTACTGGCCCTGAAACAACAAATTCTCAAGTTTCATGACAGCTTTCCAAAGAATCCATCAATCAAATAAGCAACACAACTCGACACTGACAATTCCAGACCTACTAAGAGCATTAATTAAGACTTAAAAATAAACATGAGTTTTAAAAGGGTGTTATTCATTATTTTCCCATTTATAACGTCCCTTACCTTCTGTCCTTCAGTGCATACAAATTATTATCTTCCTTGAAGCCCAGTTCAAGCCGTACCTCACCATGATACCTTCCATGTATATTCCACTCTAGGCCTCACTGATTTTTAACTGAAATACTATAATGCATAGTTCACACTTAAAAAAAAAAAAAAAACACAGCACTTTACATAAGAGCTTACAGGATCCTATTTGTTTTATCCATTCTTTTGTTCATTTTTACAATCATTAATTCAAAGGAATTATATTAATTACTTTCTATGCACCCGACGTTGTGTTAACACAACAATACTATCCCTGCATTCAGCAAGTCTATGGTCTACAAGAGAGGACACAAATTCAAATGTCTGTAGTCAAGCAGTGAAGCTGGCTAGATATGGAAAAATTACAAGTCCCTCTTGCTTTAACATTTGCTTGCCCACATTTGGTCAGACATCATGCAAAATAATTTCTCACTATAGAAAAAAAAACACTACAAAAACAATAATATAAAGAACTGAGAACTGGTTAACTGAAGCATGCATATGTCATCTAAAAGAAGCAGGTGACGACCAGCTTCATGAAGTACTTGCCATGCATATTGGCACTTCACACACTGACCCTTCTCCCCACCTAGACCAGTAATTAAACAGGTATGGATGAGCTAGCTACTAAGAGCAGCCAACTGAATAGCTGACTAACTTAGAAGCACACTTGGTAATAATAGCTGACTTTTATTAGTACTGACTATACTATATGCTAAGCTGTACTCAAAGTGCTTTGAGTTTTAAACTGATACAAACATTATATGAGGAAACAGAGGTACAGAGAGCTATTCACCAGCTTACCAAAGGTCACATAGCTGGTAAGTGGAGGACTTAAACCCAGACTATCTAGTTTCAGAACCCACAGACTTAATCCATCGTGCAGAACATAAGACATACTCCATCTGTCTCCCCAACTAGGTTATTATGTGCACAAATATTTATTGGTTGGTTGGTTCATTATTATGACTGGGTGGTAAGTATGTCATTAGGAGTGTTTTGCTTATGACTATATAAATTTCTTCACCAAAAGAAGACTTTCTGATGATATACTATGCATCAGACACCACGCAGGGTGCTAAGGTTAGGAAGATAAGTGAGACTTCTAGAAACTCATTCATTCAACAAATATCTCCTAAGGGCTAGAAGCTTAGGTTTCAGCAGTGAACAGAATAGGTATGTTCTCTTTCGTGTTGGACCTTATAGTATATCTGGGAAAACAGACATTGAATAAATATCACAAATGCAAGTGAGTGTTTCAGAGACATGCAGCTGCTACATCAAAACAAAACAGAACAAAACAAACAAACAAAAACTGACCAGTGGGATTAAGTGTAAATAGGCACACAAATGCACAAATATGCTTTTATAAAATAGTGAAGCAGTGACAGAGACACACACAAGATATAAAGACACAATGAAGAACAATTGAGCCCAAAGCTGGAAAGGGTGAGAGTGTGAAGGAAAAAGGTTGATCAGAGAAGTTTTCCCGAAGGAGAGAAAGCCTGGATGATTAGGAGGCAACCACTCGGTGACTGAGGGAAATCTGAAAAATGTATTTGTCATCTTCTCAGACTTGCTGAAGGAATGACTTGGGTACTTTGAGGATTTCAGTAATTTTTCCATGACTTGGTATAATATTTCAAAAGGAAATAGGCTGACTTTATTTGTATAATGAATGTGACTCCTTCCTCGACTGCCATAGAAATAAACTCCTTAATATTTTGGGTTTGTCTTTGCACTTAAGTAATCAGTCATTCTGTTTTTTTACAG
Seq C2 exon
GGTGACTCTGGTGGCCCACTAGTACAAGAAGACTCACGGCGGCTTTGGTTTATTGTGGGGATAGTAAGCTGGGGAGATCAGTGTGGCCTGCCGGATAAGCCAGGAGTGTATACTCGAGTGACAGCCTACCTTGACTGGATTAGGCAACAAACTGGGATCTAGTGCAACAAGTGCATCCCTGTTGCAAAGTCTGTATGCAGGTGTGCCTGTCTTAAATTCCAAAGCTTTACATTTCAACTGAAAAAGAAACTAGAAATGTCCTAATTTAACATCTTGTTACATAAATATGGTTTAACAAACACTGTTTAACCTTTCTTTATTATTAAAGGTTTTCTATTTTCTCCAGAGAACTATATGAATGTTGCATAGTACTGTGGCTGTGTAACAGAAGAAACACACTAAACTAATTACAAAGTTAACAATTTCATTACAGTTGTGCTAAATGCCCGTAGTGAGAAGAACAGGAACCTTGAGCATGTATAGTAGAGGAACCTGCACAGGTCTGATGGGTCAGAGGGGTCTTCTCTGGGTTTCACTGAGGATGAGAAGTAAGCAAACTGTGGAAACATGCAAAGGAAAAAGTGATAGAATAATATTCAAGACAAAAAGAACAGTATGAGGCAAGAGAAATAATATGTATTTAAAATTTTTGGTTACTCAATATCTTATACTTAGTATGAGTCCTAAAATTAAAAATGTGAAACTGTTGTACTATACGTATAACCTAACCTTAATTATTCTGTAAGAACATGCTTCCATAGGAAATAGTGGATAATTTTCAGCTATTTAAGGCAAAAGCTAAAATAGTTCACTCCTCAACTGAGACCCAAAGAATTATAGATATTTTTCATGATGACCCATGAAAAATATCACTCATCTACATAAAGGAGAGACTATATCTATTTTATAGAGAAGCTAAGAAATATACCTACACAAACTTGTCAGGTGCTTTACAACTACATAGTACTTTTTAACAACAAAATAATAATTTTAAGAATGAAAAATTTAATCATCGGGAAGAACGTCCCACTACAGACTTCCTATCACTGGCAGTTATATTTTTGAGCGTAAAAGGGTCGTCAAACGCTAAATCTAAGTAACGAATTGAAAGTTTAAAGAGGGGGAAGAGTTGGTTTGCAAAGGAAAAGTTTAAATAGCTTAATATCAATAGAATGATCCTGAAGACAGAAAAAACTTTGTCACTCTTCCTCTCTCATTTTCTTTCTCTCTCTCTCCCCTTCTCATACACATGCCTCCCCCACCAAAGAATATAATGTAAATTAAATCCACTAAAATGTAATGGCATGAAAATCTCTGTAGTCTGAATCACTAATATTCCTGAGTTTTTATGAGCTCCTAGTACAGCTAAAGTTTGCCTATGCATGATCATCTATGCGTCAGAGCTTCCTCCTTCTACAAGCTAACTCCCTGCATCTGGGCATCAGGACTGCTCCATACATTTGCTGAAAACTTCTTGTATTTCCTGATGTAAAATTGTGCAAACACCTACAATAAAGCCATCTACTTTTAGGGAAAGGGAGTTGAAAATGCAACCAACTCTTGGCGAACTGTACAAACAAATCTTTGCTATACTTTATTTCAAATAAATTCTTTTTAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153802-TMPRSS11D:NM_004262:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)