BtaINT0150368 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001925 | TMPRSS11D
Description
transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:HGNC:24059]
Coordinates
chr6:85255406-85257736:-
Coord C1 exon
chr6:85257594-85257736
Coord A exon
chr6:85255568-85257593
Coord C2 exon
chr6:85255406-85255567
Length
2026 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTCATTCTATTTCCTTCAGGGT
3' ss Score
10.31
Exon sequences
Seq C1 exon
GCAGCACAGTTTCAGATCTAAACCAAGGACGGGTCAATATAATAAGTAATACTGTATGTAACACACCAGCTGGTTATAATGGAGCCGTCCTGTCTGGAATGCTATGTGCTGGACTACCTGAAGGTGGAGTGGACGCGTGCCAG
Seq A exon
GTAAGTTCAAGACAACCTTATCCATGTCATTGTTCAAGTTTATAAGCACTTACTAGCATGTCTTACCATGACAGACATAGTAGTAGTAGTAGTGTTAGTTGCACAGTTGTGTGCAATTCTTTGTGACCCCATGGACTGTAGCCTGCCAGGCTCCTTTTGTCCATGGGATTCTCCAGGCAAGAATGCTGGAGTGGATTGCCATTCCCTTCTCCAGGGGATCTTCTCAACCCAGGGATCGAACCCAGTTCTCCTGCATTGAAGGCAGATCCTTTACCATCTGAGATACAACATAATTTCACCCTAAATGTCTAGATTTTACAGATTCTTATATGAAATTTTCCTGCATGTTCCATTCTGGGCCTCACTGATTTTCAGCTAAAATACTATAATGCCTAGAGTTTATGTCTCAAAGTAGCACTTTATGTAAGAATTTATGAGATCTTATTTGTTTTTGTTCATTCATTCATTTTTTTGAATTGCATCACTTAATTTCTATGTGCCAGTCTTTGTACTTATACAACATCACTTGAGCTCAGCAGGTGTATGGTTTAGAAGAGAGAACACAGGCATAAATGTCTGTTCAGTGAGGCGGTAGAGCTGGCCAAATATAGGAAACATTGCATCTATTAAACTAAGTCCCTCTTAGTTTAATATTTGCTTGCCCTCTCTTGGTAACATGTTTTGTAGAGAAATCTCTTACTATAGAAGAAACAGCAGAAAAACACAGTGATGGGAAAGTGCTGAGAACTGGCAAACTGGAGCACATATGCATTATCTAAAGGAGCCAGGAGCTAATCGGCTCCACACAGGGACTGTCATGCAAGCTGGTGATTCAGACACTAAATTTCTCCCCATATAAACCAGTAATAAAGCACTCATGGAAGAACTAACTACTAAGAGCAGTCAAATGAATACCAAACTATTCTATAAGCATAGCTGGTGATAATAGCTGACTTTTATTAGTACTGACCATTTAGCAGGATGTACTCAGAGTGCTAGGTGTGTTAAACTCTATTAAACACATAAAATTATTATTTACAGAGGAAGAAGCTGAAATACAGAGGGCTGTTATGTGGCTTACTGGAAATCATATAGTTATTAAGTAGAGGATTAAAACCTAGACCAATTCAAGAACCTCAGACTTAACTCATCATGCAACATGGAAGATATACCAATTTTTCTCTCCATATGGACTAATACATGTAAAAATATTTAGTTGGTTGATTTATTATCAATATTATAAGTGGCTCATAAACATTTCATAAGGAATGCTTTACTCATTGCCATATAAATTTCTTTTCTATTATTCACCAAAAGGGTATTTTTGATATATCAATACTATACATGAAACACTATGCATTATGCTATGAATAGGAAGATAAATGAGATTTCTAAAAACATGTTCATTCAATAAATATTTTCTTAGCCTTCCCTTTGAGCTAGAAGCTTAGAGAATAGCAGTGTCCAGAACATGTATGCCTCCCTTCCCTGATAAACCTTACAGTATAGCCTGAAAAATAGACACTGAACAATATCATAAATGCAGTGAGGGTTGCAGAGATGTGCAACTGCTACAATGAGGGGAGCTGACTCGGTGGGAGTAAATTCAAAAGGCATGCAAATGTGCTTGTATAAAATAAAGAAGTAGCAATGAAGGAGATATACACAGGGTGTGAGAACACTGGCAGTAAAAAATAATCTAGCCCAAAGCTAGAAGGGGTGACACTGGGGAAGAAAGGTGGAAGTCAGGGGTAACCCCCTGAAGGAGGGGAGCCTGGTCAGGGTAGCAGGCTGGTGAAGTCTAGGAGATGTGCTTCTCATCTTCTTACACTTGCTGAAGGAACAACATGTGTACTTGGAGGATTTTTTTAATTTTTGCATGACTTAGTATATAGCATTTCAACAAGAAATGTAAGACTAACTTTTCTGTCATTGTGTATGTGATTTCTACTATCATAGGAATAAACTTCTTCATACTTTGGGGTTGTCTTCAAGTTTAAATAATCTTTCATTCTATTTCCTTCAG
Seq C2 exon
GGTGACTCTGGTGGCCCTCTAGTACAAGAAGACTCACGGCAACACTGGTTCATCGTGGGGATAGTAAGCTGGGGGTATCAATGTGGTCTGCCAGATAAACCAGGAGTATACACTAGAGTGACAGCCTACCGTGACTGGATAACCCAACAAACTGGTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001925:ENSBTAT00000002505:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]