RnoINT0153304 @ rn6
Intron Retention
Gene
ENSRNOG00000055991 | Tmprss11d
Description
transmembrane serine protease 11D [Source:RGD Symbol;Acc:620654]
Coordinates
chr14:23389452-23392991:+
Coord C1 exon
chr14:23389452-23389594
Coord A exon
chr14:23389595-23392666
Coord C2 exon
chr14:23392667-23392991
Length
3072 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ATTTGATTTGTTTTCTTCAGGGT
3' ss Score
9.8
Exon sequences
Seq C1 exon
GCAACACGGTCACAAATCTACAGCAAGGAGAGGTCAGAATAGTAAGTTCGGAGGTGTGCAACGAGCCAGCTGGCTACGGTGGGAGTGTCTTGCCAGGAATGCTCTGTGCTGGAGTCCGTTCAGGGGCCGTGGATGCATGCCAG
Seq A exon
GTAACAACATTATCTGTGTCACCATTGAGAAGTTTATAGGCATTCTCAAGCACATCACCCCGTGACAGGCAAAAAGATAACAACAGCTACAACATACAACTCTGCTCCTCAGAAAAAAATGTATGCCCTTAATTGTAGAGATAAAATTCTGTTTTAAATTTCATTTAGCATAAAAATATTAATTGTTAATTGCTATGGATGGTCAAACCGATATAACGTGGTGGACACAATTAATAATAAAGGACTGTATGCTTCAAAATTTCTAGAGTAAATTTTGATGTTCTTATCACAGAACAATGTTAAGTTTTTGAAGCAGTGGAATCCTTAGCTCGCTTGATTCAACATCATACCCATAAATTATAAAATCATTTCCTAGCTTATAAATGTATATTATAAACTCAGAATGAAAACAGTCATTTAAAGTTCATAATATAATTAAGCTTTAATTAATACTGTTTTATTTGTAAATATGCATACTTAGCCCAATTAATAAAAACAGTATAGCATGCAGCCACTAAAAATTCCAAATTTTAAAGTACTTTAAAGATATAAAATCTATACAATATCTTAATTATTTGAATTGCAAGATTCCTAAATTATATAATAGTAGAAAAGGAAAAGAAAGACAACGGGAGGGGAGGGACAGGAAGAGAGAGGAGTGGTGGGGAGGGGAAGGAATGGGAGGGAGGAGGAAGAGAAAGAAAGAAGGAAGAGGAAGGGGGAACAGGAAAGAAAAAGAAATGGTTGGAAAAGCAACTAGTTTTCTCTAGCCTGTAAATTATTAAATTAAACATCCAAAATAACCAAATAGTAAATACACAATTGTCTCCTTATAGTAACGAGTATGGAATTTAATATGAAAAGTTTAATGAAATTAATGAAACTTAACAGGTCCCATTCCTTTACCTGATATGAGCCAATGTAGTCATAGGAGCAAATCATTCAGAAATTAAACCTCGTTATAAATACTCTAGCTCTTCAGGAATCCACCACCATTTTCCTTGATGAATTTTATTGAAACATGGCAACATGAAGTTTATTTTCTTCACCACATGCTGTTGACTTTTAATTTGGCGTGCACAATCTTGAAAAAGTGGTCCTACTTAGCAGATTACTAGAACCCAAGCCAGAAGTGTTTTCCCAAAATGATACATTTTTAACAATTTCAAGCAATAAAAAGTGGAGGTTTGGATATCGATGATCAAGAGTCTGTTATTTATGCACTTGGTTCTTTGATCCCATTATGTGAGATGTTCCCCCTGTTCCGTTAAAAACAAATTTTCGGGATTTGTGAAAGCTTTCTAAAGATCTCATGAGTTAGCTAATAACCCAGGCTGCCCGCTTCAGATCTACTGAAAGTATTGGTTTCAACAGCTTGAGGAGATTACAAACTAAAATGTTCTTTTTCATCTCAGTCTTGCAAGCCCCCTCCATTGGCTTCTACATACAAATTGTCTGCCCTTCATTTCAGGCAAGTTCATGGTATCACTACCATGAAAATTTTCCCACTCCGCCCCAGACTCACTGACTGTACTTACAACACTCTAACACACAGAGATTATGCCTCAAAAAATATAATAAGTGAATACTATTTTGCATGGAATTTTACAAGATCAATTTCATACATTCTTTCCAAGATATATCTATTCTCACTTCTGGGCAACATTCTGTGTGTCAAGGCAACTAGATTGTTCCCTGATTCCTCAGGGTGAAGAAAAGGAAGGCAAGTTCAAAGGTCTGACACAAAGTAGAGAAAGTAACCATATGTTACTTGGCACTCACTAGTACCATTTGTTTGTCCATGGTGGATAAGATACAAAACAAAAAGCTTTGCCACTGTAGAAAAAAATAGCATTAAAAAACGTAACAACAAAACGCTGAGGACCAGCAAAATGCAGCGTGAATGTCTCATCCAGAGGGATGAGGTACCAGCAGCTCCATGCAGTACTTGTCAAGCAAGTCGGTGATTCACAGACTGACCTTTCTCTCCGTCTAAACCATTAATTAAACAGGTATGGAAAACCGAACTACTATGAGCCGTCAAATGAATGGCTAACTTTTCTAGACGTACATCTGGTAATAATGGCTGGGTTTTATTAGCACTGACTATACGCCAAAGTGTGCCCAGAGTGCTTTGTGTGTTAAGCTCACTTAAATATGTTTTTGTTTTTCTTTTTAAAGCCATTTATTGATAAGAGAATTTCAGCACAGATTAGTTAAAAGAGCTTCCTGGACTTCACATACCTGATAGGCAGAGGACTCAAACTCAGGTTATATAGTTCCAGAATTCACAGAATTAACCCATAATACAGTATATTCTAAAGGCATCTCCCTAATTGGATGATTACATGTATATATGTTTCTAGCAGTTAGTTCTTGCCATTGGGTGGTAAATCTCTCATAAGAAAGGCTCTACTTACTGTCGTAAACATTTCTTTTCAATTATTCATAAAAAAAAATAGTGGTGGGTGATTTACTATGCATCAGGCCTCATACCAGGTAGTAAAGAAAGGTCAGGTCGGGAAGTGACACATCTAAGACTCTTTCACTCAAAAGCTATTGCCTTAGCATCTTCTATGGGCTAGAAAGCGAGGCTGTGGCAGTGTCCACAACAAGGATGCTCCCTCCCCCTCTGGGATTTTACTACGAGACTGCTAACACAGGCACTGGCCAAGTATCAAAATACAGGGAGTGTTAATACAAGGAGAGCTGTCCAAGGGGAATGAGCTGGACTTTTTAGAAGCAGCGATAATCACAGCACGTGAGATAACAGGAGGAAACTAATGGAGCCCGAAGTCAGAAGCACAAAAGAAAGAAGAGGATCATGGAAGCCTTCCTAGAGGGAGGCCTGAGAAGACCAGGAAGCAACAAGGAAGCAACTGAAGGAAGGCTCGCTCGTGAGCGTTAATTAGTCTCAGCATTACTGGTATATTTGAAAGATTTCAGTCATTTTTTTTAACGGCTTGGCATGTTTCAAAAAGACCTACGCTGGTATAATAGCTTGGACTTCTACTGCCGTAGAAATAAGACTAATGATTTCAAGGTTCAAACCATTTGATTTGTTTTCTTCAG
Seq C2 exon
GGTGATTCTGGTGGCCCACTAGTACAAGAAGACACAAGGCGGCTTTGGTTTGTCGTGGGGATTGTGAGCTGGGGATATCAATGTGGCCTGCCAAATAAGCCAGGAGTGTATACGCGAGTGACAGCCTACCGCAACTGGATTAGGCAGCAGACTGGAATCTAGGGCGACCGAGGAAAACGCGCCGCCTCCCGTGAAGTCTGTACCCAAGTGCGCCTGATTCAAATGCCGCAGCCTCGCTTTTCAACTGCCAAGGAAACTGGAAACGTCCCATTTCAACATCCCATTACATAAATATGGTTTAACAGTTTAGCATTTCTTTGTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055991:ENSRNOT00000088552:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]