HsaINT0169724 @ hg19
Intron Retention
Gene
ENSG00000137648 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:11878]
Coordinates
chr11:117969700-117973968:+
Coord C1 exon
chr11:117969700-117969813
Coord A exon
chr11:117969814-117973815
Coord C2 exon
chr11:117973816-117973968
Length
4002 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCCCTGCACTTGCCTTCCAGTCA
3' ss Score
8.45
Exon sequences
Seq C1 exon
ATGTCAAACCCCTGCGCAAACCCCGTATCCCCATGGAGACCTTCAGAAAGGTGGGGATCCCCATCATCATAGCACTACTGAGCCTGGCGAGTATCATCATTGTGGTTGTCCTCA
Seq A exon
GTAAGTGACAGCCCGTACCCGACTTTCACCCTCTAAGTAAATGACAGGGCCCAACCCCCACCCCCGCACTCACCCCTGAATAAGTGACAGTCCCCCACCCCTGCCCTCACCCCCTCAGTAAGAGGCAGTCCCACCCCTGCCCTCACCCACTCAGTAAGTGGCAGCCCCGCCCCTCCCATTATCACCTCAGTAAGTGGCAGCCCCTACTTGTCCTTCACCCCCTCAGTAAGTGGCAGCCCCCACCCCCACAGTCAGGGGCAGGTGATCTGCATAAAGCTTTGCAGAAAAAATCATTGGTATAATAAAAGGAATTTGAGGAGAAAAAAACAGAGAGAGAAAAAGAAAGAAGAGAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAAAGAAAGAAAGAAAGAAAGACATGTATCCACCCCCTGCTTTGAAGAGAGCCTTCTTCTAAAAGTGAAAGGGGAGATGAACTCAGCCCCCATCTGTTCCAGACGGCTTCTATCCCAGGTGACTTCTTCTAGAGGGAGAGCACAGTGGCATATGTTCCTAACCCACACATGCAATTTGCAGGGCTGCCACGCCCCCTGCCCCCTCCTTCCCATCTTCTGCAGATTGCAAGCTGAGTGGCTCTGAGCAGCGGCTGGAAGAACAGGGCGAGTTTCTGCTTGTGAGGAGGGGAGAAAGAGGAGGCAGCAGGGAAGACCCCCCAGGCAGTTGGCACCTGGCCCCCTTCAGCTTGGCCTTCACCATGGCCAGTACCTGAGGCCCAGTGTGGTCTTGAGCAGGCCTCTCTGCCTCAGGCCCTTATCTGTGATAAAGAAGATTCAACTGAAGGAGCAGGGATGTGGGTCCTTTTTGGCTCCCACATCCTATGATGGAGTCGTTGCCTTTGTTATCCACATGAGCACAGCAGGTTACTGACCACAACTTTTCACAGCAAGAAGTAGGGCACTGGGGACCAGACTAGGAATCAGGACACCCGAGACAGGGATTCTGGCTCTGCCTCTTGCTGCTGCGTGACCTTGAGTAAGTCCTTCACTGCCTCATACCCTCAGTCTCCGCACCTGTAAAATGTCCTTCCTCCCTCAGAGCGATATCATGAGCACCAGTGAGATAACACATGTAAAGGACCAAGCTAAAAACCAAGTTTTGCAAAAGAGTGTGTCATCACACAGCAGCAGACAAAATGTGACCCAGGACATGCATTTGCTAATTGGGGCAGGACTGCCTGTGCAGCCAGGGAATAGCTGGCCTTTCAGGAATTTGTACTTGTAACTGTGGTGACATTTCCAGCAGTAGCAGCCAACTGCCTGGTTAGAGGACACTGAGAGAGACTCTGGTCCTCATTCTACATGAGCACTGAGGCTCGGAGAGGAGGAGTGGCAGTCAGGGACAAAGCTGCGACAGAACCCCGGTCCCCTGATTGAACAGGTCCATTTCCATCTCGTGGCGGTGGAAATGCAGAGCCACAACATAAACCCCACTAAAAGCCCTGGGAGCCCTGGATGGTGTGAGATGCAGATGACCCCAAACCCTCTCTCCTTGACCTTGGTTGCCCACATGATGGAGGTTTGCAGTGACATCAGCAGACTTGCCATCCTGTTCTATTCAGGCTAATGTTAAAGTGAGCTTGCTTTCCATAAGCATACACCCTGCCACAGTGGAGATAAAGGGGACCAAAGTTATCCAGCGAAAGCCAAGCAGGCACTAAAGCATAATTCAGAGCTGGACACTCCCTGTCCCAGAAGGTCCTATGTGGCTTCCATATCCTGGGCCCCCAGATTCTGCAATCAGAGGTTGTTACCCAGTCCTCCATCCTGGGCCGGGTTCCCTCAACCTTATGGCTTCTGGAGTCTCAACTGGCAATGCTGTCTCCTGGATTTGTCCCAGGAGGCTGGAGTGACTCTGCCTTACCCTGGCTCCTGATTATAAACCAAACTCCAAAGAGCTAAGTAATATCTAGCTCCTCCTTCTCCCTTGCTTCACTCAAGCCAGGAGTGTCAGGGCCAGCAGATCACATCTCAAGCTTCCCCAGAGAATTAGATGGGCCCTGGCTCTACACTGGAAGCACTGTGTGCCCTGGGAAAATAAAGCCTGACCTTCAATTCTCCACGTCCCTGTTTGTAATGTGAGTTAGTAATAACACTTCCCTCCCAAGACTGTTGTCAGGATTACGTGAGGAAATGTATGGAAAGCTCCTGACACGGTGACAAGCAGGGACCATTATTAGATTTAACGCCACTACTCTTAAGACCAGCCCAGGGTGATACTGGACTGGAGAGGGTCCCATCAGGCCAAGACAGAATTCAGTTAGGAAGGAGGAGTTCCCTCCTGCCAGGGTGTTTGGCTGTGGGTCTTCACTAAGGAAAAGTTTGTTTGTATGTCTGTCTGCTTGTTTGTTTGAGACAAGGTCTTGCTCTCTTTCCCAGGCTAGAGTGTAATCGTGTGATCACCTCACTGCAGCCTCAAACTTCTAGGCTCAAGCAATCCTCCTGCCTCAGCCTCCCAAGTAGCTAGGACCACAGGGGCACACCACCATGCCTGGCTAATTCTTTTTTTAATTTTTCGTATAGACGAGGGTCTCACTATGTTGCCGAGACTGATCTTGAATTCCTGGGCTCAAACAATCCTCCTGCCTTGGCATCCCAAAGTGCTGGGATTACAGGTGTGAACTACCATGCATGGCCAGAAAAAGTGTTAAAATATCAGTTCCCTGAAGGATTAAACACACTCAACATCTTTCCATCATCCCAAAATGGCAAAAGAGCAACAGAATTTGAAAGCAGCTGGCAGAATCTAAAGACGGCGAGCAGAAACAAAACAAAACCGAGGACCAACCCCTTCACAGATCTTTCTCTTTTTTTCTTAATTTTAGTTCTTTTTACTTATATATTTTAATTATTTTTTTCTTCAAATTTTATTCCAAGTTCTGGGGTACACGTGCAGGATGTGCAGGTTTGTTACGTAGGTAAGCGTGTGCCATGGCGGTTTGCTGCACTGATCAACCCTTCACTGAGGTATAAAGCCCAGCAACCATTAGCTATATTTCCTGATGCTCTCCCTCCTCCCGCCTCCCCCCGACAGGCCCCAGTGTGTGTTGATCCCCCTGCACGTGTCCATGTGTTCTTACCATTTAACAGTTCTTTCACCCAGGTAAAAGCACCCAATTCTAGAACTATACTTGATAGTTACGAGACATTTTCATGACTACCATCATACCACATGCTCTCAACAGCCCTGCGAGGCAGATATTATAGATATCATCATCCCATTGTACAGATGAGGAAACTGAGAACTAAGAAGGGAAAGCGATCCATATAAAGTTGCACAGTAAGGCCGAGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGGTCGAGAGCAGCCCAGCCAACATGGTGAAACCCCGTCACTACTAAAAATACAAAAAATTAGCCAAGTGTGGTGGCATGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGACTCACTTAAACTTGGGAGGCAGAGGCTACAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGATGACAGAGTGAGACTCGGTCTCAAAAAAAAGAAAAAAGTTAAGTTCCACAGTGGGTGGCAGGGCTAGGACTCAGAACTGGGTCTTCAGACTCCGGGTTCCTCCTCTTTTACCAGTACATACTGAGCGAGCACTGGAGGGTAAGAGGCAGTTACCAGCCTGTTTCTCCCACACACGTGACCTCTCTTGACTCCGCAGACATCTTGTGGGGGTGGGGCCGGTGTTACTATCTCCACTTTACAGACAAGGAAGCTGAGGCTCAGGCCCAAGTCTGTGTGCTACCAAGTAGCAAAACTGAGCCTGGAACTCACACATGCGTGTCTGAGAGCCCAGCACTATCGCCAGGAAAACCCAGCGTCTCCCTGCTCAAGCCTGACCCTCAGCCCTCTCTGCCTCTCCCTGCACTTGCCTTCCAG
Seq C2 exon
TCAAGGTGATTCTGGATAAATACTACTTCCTCTGCGGGCAGCCTCTCCACTTCATCCCGAGGAAGCAGCTGTGTGACGGAGAGCTGGACTGTCCCTTGGGGGAGGACGAGGAGCACTGTGTCAAGAGCTTCCCCGAAGGGCCTGCAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137648-TMPRSS4:NM_001083947:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=61.5),PF139921=YecR=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)