MmuINT0162732 @ mm10
Intron Retention
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:45184241-45185928:-
Coord C1 exon
chr9:45185815-45185928
Coord A exon
chr9:45184394-45185814
Coord C2 exon
chr9:45184241-45184393
Length
1421 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTCCCTAATGTACCTTCCAGTCA
3' ss Score
5.88
Exon sequences
Seq C1 exon
ATATTGTTCCCTTTCGCAAACCCCGAAGGCCCCAGGAGACCTTCAAAAAGGTGGGGATCCCCATCATTGCAGTGCTGCTGAGCCTGATAGCCCTCGTGATTGTGGCCCTTCTCA
Seq A exon
GTGAGTTACAGCCCCCACACAGCTTTCACCCCACCCCTCTCCCCTCTGAGCCCCCATTCTCACCCTCACCCCCTCAGCCAGCTACAGCCCTCACCATGCACCAGTCCTCCCATGCACAGTGATAGGCAGGTGATCTGCACAGAGCTTTGGGTGTGGGGGGGGGGGGGTAAATGAATTCTCATGCCTCATGTATTCTCATGCCTGCTTAGGAGGTAGCCTTCTAAGTGCAAGGGGAAGGTGAGCGCACCCCTCCGTTCTCCCAGATGGCTTCTCTTCCAGATGGTTGCTACACACGTGGCACCCATTCCAAACCCACACAGGCAGTGGCAGAGGTGCCCACCCCCAGCTGCCTCCTTCCCATCTCCTGCAAACTGACAGCTGGTGGTGGAGCAGGGTGAGGGGGCTGGCTGGATGTCTGTGCAGCCCTACAGCTGTCAGGCTAGAGAGTATTTCTGCCTGTAGAGATTGGAGGCAAAAGGGGTACTAGGGAAGATGACTGGGCAGAGAGAACTCTCTGCCCACCCCAGCTCAGTCTTCATGAACCCGGATGTCATCTCAGGCAGCACACTCTGCGACAATGATTTCCAGAGTTACAGCAGAGACGGGCCACTGCTTTCACAGCACGGAGCTGAGCATAGAAGACAAGCTTAGGAGTCAGGGATGGGGATCATGGCTCCTCCAGGGAACCTGTGCACCCAGATAGGAGTCCACTGAGCCCCTCAAGTATGAAATGCCTTTAAGCATTACAAAGAACAATGAGAAACCTTATGTGCAGAACCTGGATTAAAAACCAAGAGCATGTAGCAGGCAGAGCAGGGACCCAGGGCACGTAGTACCTGTACAACCAGGGCATGGCCCACCCTTGGGGAGCCTTACTTAGCGCTCAGGTGACATTTGCACTCGCAGCAGACACCACCCATTGGATGGCACACAGAGACCTTCTGCTTGAACCCTTAATTCTACAGTTGGACACTGAGGTTCAAAGCCCAGGCAAGGCAAGCAGGAACAGAGGCTGGGATGGGACTCCAGTTCTCTGGCTGACCAGGTCCTCCTCGTAGTAACAGTGGGTATCCACAAGTCAGACACTACCTTGATCCTTGAGAGCACCAGGGTGGTTATGCAATGTATAAATCATTTCTTCTCCACCTGAGATGGTCCAACCTGAGAGCAGCTATGTTCGTTAGTGTTTCATTACTGTAGCAAACACCAGAAAATAACTCCCAAAAGTTGTCCTCTGACCTCCAGTCAGGGACACACATGCTCACACGCCCGCCCACCCGCACACACTACAGAAATGATTTATTTTTAAAATTGGCTGCCTGCCTCCAGCCAGCCTGACTTTCAGAAAAAGCAGCCCCTCTCTGTCCCCAATCGCCTGCTTGACCCCAGTCCACTCTGCTCCTCCCTAATGTACCTTCCAG
Seq C2 exon
TCAAGGTGATTCTGGATAAATACTACTTCATCTGCGGCAGTCCCCTGACCTTCATTCAGAGGGGCCAGTTGTGTGACGGCCACCTTGACTGCGCCTCAGGGGAGGATGAGGAACACTGTGTCAAGGACTTCCCTGAAAAGCCCGGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091:ENSMUST00000034599:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCCCTTTCGCAAACCCC
R:
GCCACTCCGGGCTTTTCAG
Band lengths:
262-1683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types