MmuEX1004972 @ mm10
Exon Skipping
Gene
ENSMUSG00000091996 | BC049352
Description
cDNA sequence BC049352 [Source:MGI Symbol;Acc:MGI:3040681]
Coordinates
chr9:45182007-45241509:+
Coord C1 exon
chr9:45182007-45182315
Coord A exon
chr9:45192588-45192836
Coord C2 exon
chr9:45241393-45241509
Length
249 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTACTAATTCACTAGGCA
3' ss Score
5.83
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGAAGTAGAGGACAGCAGGTACTGGGCATGCTGTCCTTGGAAATGAGGTGACAGGTGTCCCTTTTCTAGACAGTGCTGGGAGTTCTCCTCCTCTGGAGGGAAGAGAGCAGGACCTTTACAAAGAAGGGTCAGAGGGACAGAGGTCATATGGATTCATTCTGGCTGCCCAGAACATCTACTGTACAAAACCTTGAGGCTGCTTTAGGGATCTATGGGGAGAACTGTGATCGACAGGCAATGTCTGTCTGAGGCAGACTGCTAGGGAGAGTGTGACCCCTGCCTGCAGCAGATCACCTGGGCTCCTTTCAG
Seq A exon
GCATTGACTACCTATGATGGATGAAAGTTATTCTAGAAGCCAAGACACAGAAGGAACAACAACAGCAACAACAACAGCAACAACAACAACAACAACAGTGCAGTCTACACCTTTTTGCGCTTTGGCTGCTCATTTTGAGCTGAAGTGGCCTGATACTCCCGTCAGGCAATGTCTCCCACTGCTGGCTGCTCAGTCAAGCCTGTACTGTACAGAATATCGTCCTCGTTCACAAACAAAAGGCAGGAAACA
Seq C2 exon
GTGACGACTCCATCAGCACACTGGGCATGATCCTTGGAGTGGGACTGTCACTGCTGCTCGTGTCCATCCTAGGCTACAGTTTGGCCAAGTGGTACCAGCGCGGGTACTGCTGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091996_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTGACAGGTGTCCCTTT
R:
ATCATGCCCAGTGTGCTGATG
Band lengths:
297-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types