HsaINT0169747 @ hg38
Intron Retention
Gene
ENSG00000187045 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr22:37075135-37084404:-
Coord C1 exon
chr22:37084295-37084404
Coord A exon
chr22:37075281-37084294
Coord C2 exon
chr22:37075135-37075280
Length
9014 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCA
5' ss Score
6.43
3' ss Seq
TCGTCTCTGACTCCCCCCAGGCT
3' ss Score
9.05
Exon sequences
Seq C1 exon
GTGCCCTCTCTGGACTACGGCTTGGCCCTCTGGTTTGATGCCTATGCACTGAGGAGGCAGAAGTATGATTTGCCGTGCACCCAGGGCCAGTGGACGATCCAGAACAGGAG
Seq A exon
GTACCACTTCCTCTCCTCCCTCTGGCTTCCTTTCCTCCCTCCCCCTCCCTCTCTTCCCTCCTCAATAGTGACCCCCTCATTGGAAGCCCAAGTCCCCAATCTCAGAGGGGCAGCAAGGGGAGCGAGCAGAGGCTGGGGCTGGTGTCAGGCCTGTTGCCCTTGACCTTGTCCTCGTCCCAGCCTCCGCCCTGGCCCCGGCTTCCCCTCTGGCTACCCCAGAGGTCTCAGACACGTTTGGTCATCAGACACCTTGGATGTTTATTCTAATTACAGCAAAATTGTCTCATCTTCTTGGGTGCTGTAACCCCCTCTGGCACCCTCAATCCTTCAATAAAATGTTTCCAGAGCCAAAGGACTCATGGGCACTTTGGTGCCTTCCCTCTAAACCCAAGGCGTACCATCAGAGGTGCCTCTCCCTTATCACGAACCCCTGCTGCACAGCCAGGCCCAATCCCATTGCACAGGGTAACATGGAAATCATGGGTGCCCTGGATCCCCCGAATCCCCAACGGGGCACTTGCCCTCTTCCCTGCTCTTGCCCTTGCTCCCTCTGGTAACTAAGTTTCCGACAAAGAAGTGAGTCCTTACAGAGATGTGAGCAAGAGACAGTGGGGTTAGGCTAAGCGACTACCGTTGCCAGGGTCACTATGGCATGAGGCCAGTAGGTGCCCACTGGGCCTGGCCACCAGGAAGCCATGGGTGGTGCCGACAGCTTCAGAGGCCTGGGCTGGGCAAGGAGGCAGGGAAACAGAGACAGGGTGTATGGACAGGTTTTCATTTGTCTGGGAAGAAAAGAGAACTAGGAAATTCAAGGAAGGGGACATTTAAGACGGGAGAGGTTCCATATCTCAAATGTGTGGATCATCCCAGCATCCCCAGAGGGAGAGAAGGAGGCTCAGGTGCAGGTAATATTGTTTAGAGTGGGGAGGGTGGGCAAGGGGAGAGGGAGGCCCTCCCATGGCTCCATTGTTGGGGAGCAGAGGTTTGGGGAGAGAGAAGAGGAATATTGAAGCAGCGATGGCAGAGCCAGGGAGACCCTTTCCCTGGGAATCCGGGGTGAAAACGGTCATCGTGTCAGCGTCAGGAAAGAGGAGACTCTATCCTTCATCGCAGGTTGGGCCTCTGCCCTCCCTTCCAACCTCGGAATTCTGGGGGCCTAATGGGTTCAGAGTCTAGTATGAAAGATTTGTCATTTCTTGATTTCACAGAGTTTGAATATCTAAGATGCCAGTCTTGGAAGATGCCAAAATTGGAAGGCTCTGGGGCTCTAGAATTCTTGGATTTCTGGGGTGTGTGTTCCCAATCACCAACACTTGTAATTTGCTTGTTGGCTGATCCTATTCAAAAGGATCATCCAGACAAAAGGTGACGAAGAATGACAAGGTTTGCTTGACTCCTTTTTGCAATTTATCTGGGACTAGGATTAAAAGAAAGGAGAAGAAATACTCATGGCATGATCTAGGGCTATGCTGTTGGGGGTAACATGGGGAGTGACTTTGGGCCTGTGCTGTTGGGGGTGATATGGCGAAGCAGTGCCTTCAGGGCTTTGCATTTGGTGGTGATATGCTGATGGAGTGTGACATCAGGCCTGTGCTGCTGGGGTGACATGCTGGTTCAGTGATGTCAGGCCTGTGCTGTCTGGAGAGCAGAAGGCTTCTGTAGCATGATGGGGGCACCTCTGGGAACGGCTGCCCTGACCCCTCATGGAGCTCACTTGAAGCCTCCTTGCTACTCACCTAGGCTGGGGATGGCTGGCTTCACCCCCGCTCACAGGAACCCGCAGGGTGACCCTGAGATGGATCCATGATTCACAGTTCTGCGAATGATGAGAACATGTTTTCCTGCCTCCCTCCCTACCGCAGAGCTGAACTTTATGTCTCAGGGAGGCCCACAAAGGAGAAGGAACAGTCTTGGGTCTGACACTCCCTGTCTCATCCCTCACCCCCTTGGCGACTCCATTTGCCAGAGGCGGGGCCCCAGCATTCAGGGGTTGTGGGGGGTTCGGTGGCCTGGAGTTAGGTGCTAAGACAGGCGTTCAGTGCATTGGCCCAACAACTTGTGTGGTCATTGGCGCCGTTCCTGTTTCCCAGAGAAGGAAATCAAGGCTCAGCAGGATTAGGTGGCACGCAGATGGGTCCACAGATGGGGTCTCTCCCATACCCCCAACAGCCACAAACAGCAGGCCAAAGGATGCTCCACCCCATGCTTCCTGTGGGAAGGCCCTCCTCCCTCCCTGATGCAGTTGGGCAAGGGTCTGGGTACTGGGGAGACAGGGACTTCGTGAGCTACCCTTGGGTAATGACAGAGAGAGTGTGGAACACGGATGGGAGAGTCTTTTCCCTAATCCAAAGGAATGATGCCTTGATGGTGAATTTGAGGCACTAGGACAGCTTCCAACAGGGTGGAGGGATCTCGCCAGAGTCTGAGCACCACTGAGCTATAGAATGTGTGGGCTGAACTGGTCCTAGCACCCAACCTATGGTACAGGTGGGGAAACTGGGACCAGCGAGGGCTAAGGACTTGGCCTCTTGTCCCTGTCTTTTCTGCCTTTCAGTGGTGGAGATGGGCTTCAGGGTGTAGCCAAGCGGTGGCTGGGTGGTGAGGATGAGGCCTGACAGCTCCCTGTGCCCCCATAGCTCCCCCTCTCTCTGTTCAGTCCTCCCTCGCCACACGGGGGTGGAAGTGCTCAGCAGGGGCTGGCATCAGGGTTTGCATGGATCCCTAGATGCACCCCCTTCCTTGTCTGTGAAACGAGGGGTTCAGGCCAGCCCAGGGCCCCAATCTTTGATTGCTTACCCATCAGGAAGCTATTGTCTCCCATACAAGTTGTGTTTATTAATTCCTGGCCAAACGCCATTCCAAGTCAGGCTGGTGAGGTGGAAAGCGCTTAAGTGTCGAAGCCAGACAGGCCAGGGCTCAGCACCTGTCTCCTCTGCTTCCTACCTGGGCGAGGACTTACATCTCCCAACCTCAGGTAACTCATCTGAAAAAAGGGCGTGAAAGAGACCCCCACCCTGGGAAGACTAAGTGAGACAACGCGTGGAGAACATTGCACACGCGGGCTTAGGTCAAGTGCAACAAACCTGCGTTCATCACCGGCTCTCACTCTGCTCTGGGCAGGCACAAGCTGAGGGGTTTATGGTGCTGGCTCTTTCAGCCTCAACAACCCAGCGAGGAAGCAGGTGCCTGTACTGCCTTCACAGACCAGTGAGACACCCAAGACACAGAGAGATGAAGTAATTTGCACAAAGTCACCCAGCTCTTTGAGCCAGAGTTAAGGCCAGGCAGCCTGATCTGGAGTGCACGTGGGTGCACAGATGCATGTCTGTGTGCGTGCGTACATCCATGCATGTCTGTGCACGTGTACGTGCATGTGTGTGTGGTCCACGTGTGCGATTCTTCCCTCTGAGCCTCTAGCGGCCCATGCCAGCTGGTGACTCCCTCAGCCAAGGCATCCCCAGCCAACCCACTGGCATCTGGGTGGGGGGATCGACAGTTTCTGTGGCTGTCCCACCAGTTCCAGAGCGGCCTGGGAAGTCCCAGCCCTTTCTTCTCAGACTTTCATTAAGGGTCCAGGGTCCCCAGGGGCAGACTCTTGTCCCCTCCCCGCAGACTCCTCCTGTGTGAATGAATGTGGAAGGGAAGGCAGAGGTGGCGCCTGCAAACCATCCGCACTGGGCCACTGTGCCCTCTAGTTATGATCATGGGCGATAGTGATCATCCCATGTAGATGCTGAGAAATTCTTAGAATGAGCATTTGTTGGAAATCTGCTTGTGTGGGTGGCAAAGACATGAGAGGTCTAGGGAAGAGCAGATTTTCAGACAAGGCACTTTAGGGAGGGGGAGGTACAGCCCTTTGGCCCAGAATGCCCATTGATGGAGAGGGCGGGTCAGGGGAGAGGGTATCTTAACCCTCAAGTGCCAGCGTAGTGATGAGGAAAGGCTGGCCTGGTGGGCCCCCCATGGACTAAGCATCCTTAGGCACTTCACCTGACTCCTCTGAGACTGTGGTGCCTCCTTCACCCCTGACCTGCCTGCTTTCTACCTAGCTTCTCCCGGTGCCCACTTGAGCCCAGCTGAGGCCTCAGGCCCTTGAGTGGCCTGGGGGTGGTAGAGGGACTTGGCCCGTGAGATCTGGCCATGGCTGCTCCATTTCGCAGAAGCCACTCTCACGGGCTGCCACCGAAGCACGGGCTTCCCCCTTTCCGGGAACCTGCCTCCTGCCAGCTTCCTCTCCTGTGACATCACTTCTCTTGTGATTCGCCCCACCATTTCCACTCACTCCCAGCCAGTGGGGACAGGCAGAACCATGGGTTCCCTAGGCCAGCTGGAGCCACCCCCGACCCGGCCTGGCCTGGCTATGGGGTGGCCCTTGTGTTCTCCGGAGCGCTAGTGGCCAGCACAGGCGGCAGCCACAGACACTTAGTAGGAACTTCAGTGTGGCTGACCTGAGCTGGGCTGGCCGTGCAGGAGAGTGCAAGCTGCTTCCTCCATGAGCTCACAGCCTGACGTCAGCAAGTGCTTCAAAGAAGTCATTTCCTATGCATGCCTTAAACCATGCCACAAGGGAGATACGATCACCCCTGTTTTACAAATGTGAAAACTAAAGCTTGCTGAGGGTGACCCAAGGTCACACAGCTTGTTCCTGGGGCAAAGCCAGGCTGCCAATTCAGCTCTGCAGCCCCAGGTCTAGAGCTCTGGCAATGCCAGGTGCTGCTCTCCTCCCCTCTTCAGCACTTGCCTTCTGTGACCCTCCTTCCCCTTTAATCTGTCTGTAGGTAAGGGCACGGGGGTGTGCATTCATCCACCCACGCACCCTTCTTTCCTTCTTCCTTCTTGTGTTCTCCCCACCCTTCCATCCATCCATCCATCCATCCATGCATCTATCCCTCCAGGCAGTACATCCTGACAGGGTCCCTGTCTACCTCCTGGATGAGGCAAGAAGGAAATATTCCCCATATCCAGAGAGGTGAGGAAGCAAGGCAGGCCACACGGTGCAAAAATGTGCCTTCAGACACTCAGTACTTTGTAGCCAAGATGAACTGGCAGGCATCGCAGCAGTCAGGCTTCTGGTGCTTCTTGGAGAGGGCTAGAGGGGAGCACTTGTTGGACGGGAGGCACTGGAGAGCCAGAGAATGTGCACCCTCCCCCAGAGAGTTCTGCAGCAGAAACAGAAAACTCAGATGGGCCAAGGGGCCAGGCCAGGGCTAGAGTCTATGATGGGGGGTAGGGTAGTCCAGTGGTGTTTTCGGGGCTTTTCTTTCTTTCTCTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTTCTCTTTTTCTCCTTCTCCTTCTCCTTCTTCCTCTTCTTTCTCTTTCTTCTTTCTTCTTCCTTATTCTCCTTTTCCCTTCTTCTCCCTTCCTCTTCTCCTTCTTCTCCTTCTCTTCCTTCTCCTCCTCCTCTTTCTTCTTCTTCTCCTTCTCCTCTTCCTCCTCCTCCTTCTTCTTCTCCTCCTCCTTCTCCTCATTCTCTTTCTCCTTTCTTCCTCTTCATCTTTTCTTCTTCTTCTCCTCCGCCTCCTCCTTCCTCTTCCTCTTCCTCTTCCTCTTCTCCTTCTAAAGGAGCAGGAATCTGGATTATTATGTGAAATTAGCTCGCGACTCAATGAAGCAATTTCTACATGGTGCATAAACAGATTGTCTTTACGCTGAGTGACTCCGCTTGGGCCACTAGATTTCAGCCGCTGCCTTGAATTCCTCTCTGGCGCTTTCTAAGCAGACGCTTGTTCCAGGGATTCCACCACCTCTACCCGTGCTCCAGGCCTCCAGAGTGAGAACCAAACACTGCCCAGACAGACAGGTTCCCGGGTACACGGTGAGGCCCTGGGGAAAGGTTGCTGCCAGCTACAGACTGGTTCTAGGACTCTCCCTGGAGGTTGAGAGAACTTCCTGTAGCAGGCACAGGTGTCTTTGCCTTACAGCCCCTGCCCAAGGCTTGGGTGACACTACAGGTCCTCAACGCAGTTGCTTCTAGGGTGAAACGTTCCACTCCCCTCCAACCCCGGCTTGGGTTCCTTCTCTGTCTCCCCACAATCTCCCTGTGACTGTGGGAAGGGACACCCCAAGGCCCATGGGATGCGCTTGACTCCTCATTCCCCGCACTAGTCCTTCCCAACCCCTGGCTCCCCTGTCTACTTCCTGAGGTCCTTCTGTGAGGAAAACAATCCATGATAACTTTATAGACAAACAGACACCAAAACCTGCGTTTCCTGGGTTTTACAAGAGCAAGAGGGCCAGGCTTGCTCAGGGGCGCCCCCTGGCGGTGCCTCGTCCCCCACCGGCCCTGCTGGGCTGGGGGAACCATGGTCGGGGGTGGCGGCTCCCAACCTGTTCTGCCTCAGGACCCAGTCACTCTCCGCAAAATGACTGAGTACCCTAAAGAGTTTTTGCTTATACAGGTTATAGATCTATACTTGCAGCATTAGAAATTGAAACAAAATTTTAAAATGTTTATTAATTCTTTTAATATAATTATAAGCCCATTACACATTTGAATATAAATAACATTCTATGAAAATTAGTTGCATCCTCCAAAAGTAAAAACATTTAGTGACAAGAGTGCTGTCATTTTACATTTTTGTACATTTCTTTAACAACTGGCTTCACAGACTACAGGCGGGACCTTCGAATCTGCCTCCGAGTTCAATCAGTCCCGATGTCACACATCAGTCTCTGGAAAACTCGCCTGTCACCTTATGAGAGAATGAGGGCAAAAAAGGCAAATGATATCTGAGTGTTACTATAAACATGACTTTTGGACCCCCAGGGGTCCCCTGACTGTGCTTTGAGAACTGCTGGTTGGTGTAAGGGTAAGATCGTGGTCACTGTGGCCAGATAGACTTAGGGGGGTGCCAGAGTCTAGGCCAGGCGTGTGGAGGACATGGGGCATGTAGGGGGCTCAGACCTCAGAGCTCCTGTTGCAGTGGGAATTCGGAGCCCTCCCCTCAAGCAAGCTAGGTGAGCTCTTCTGGGTCCTGAGGCAAGATTCTGGCTCCACCTTGGCTCCTGCACTCTTGAGCCTCATCTGTAAAATGGGATGAGAGCAATTCCTCCCTCCCTGGGTGGAGGTGCTGCTTGAACCTCAGAATCCCCGTGCAATGAGGCCTTGTGATGCCATAGCCAATGAGGCTCAGCCCCAGCCACACACCTGGAGATGTTAAAACAGCCTCAAAGCTCATCTTCAGCTGTTCGGTGGCTAAGGAATTGATTAACTTATTGAACGGTTAAGTGCTTACCACATTCTAGAAGTTCTGGGGAAGTGCCTGGCCCTTGGGAATCATGGCCGGCTCCGCAGGGTGTTGGATTTGCTGTGGGATGTCCCCACTGGCCTTCAGGGGCATTCCTGATGCTCTCTGGATTTCCATCTGCTTTCTCTGCCAGGGGCATTTTCAGCTCTCCCTGCAGATTTTCAACCTGCACCCTGAGTGTGTTTCCCCCATCTGCAAAGCACTCTGATTTGCTCTGTGGAGGGCATTTCTATGAGCTGATGAAGCTGTCCCCATCTGTTCTGCAAGGGTGTCCCACCTGGGATGAAAAGGAACCCCCGGCTGCTGTGGAGGGAGGGTCCCACTGTCCTGGGGGAGTGGCTGCACCCACTCTGTGAAGTCATGCCGCTGCCCACTTGCTCTGTGGGGTGAGGTGCACCGGACTCTCTGCAGGAGGAACCCCTGGGCCCATGCCCTGGAGATGGGAGGGCTCCTACCTGTTCTCTGGTAGGAGAGAAAGACTCAGCCTCTCTGGAGATTCCCCCACCTGCTCTGTTTGAACAACGGTATCTTCTTGGTGGTGGTATGGCAGGGGTGCAGGGGCGGTGTTGTCCAGCAGGGATGTGAGGGTGCTCCCACAGCTGGGGGTGGTCCCACCCCGTGTGGCCATGCACAGAGAAGGTGCTGCCCATCAGCACTAAGCTACTGGTCATGGGAGAAGGACTGGTCCTTCCCTCAAGCCCACAGTGTCACAGGGAGGCAGGAGGGTTGGTGCCTAAATGGGGAGCACTGCTGCCCCCTCGTCCCACACCAAGCTCAAGGCAGATGACCGTGCACATCTGTGGACAGTGGGGCAGTCAAGGGCTTTTGCCTCAACTGACACATTGAAGCCTTTTGTCAGATTCAAGATCAACAGAAATAATTTTTCCTTTCTTTCTTTCTCTTTCTTTCTTTTCTTTTCTTTTTTCTTTCCCTCCCTCTCTCCCTTTCTTTCTTTCTCTTTCTCTTTCTTCTTTCTTTCTTTCTTCCTTTCTTTCTCTTTCTTTCTTTCTTTTTCCCTCCCTCCCTTCCTTCCTTCTTTCCCTCCCTCCTTCCTTCCTACCTTCTGTCTCTTTCTTTCTTTTTTTGACGTACTTTCGTTCTTATTGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACCGCAACCTCTGCTTCCTGGGTTCAAGCGATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTACAAGCATGTGCCACCATGCCTGGCTAATTTTGTATTTTTAGTAGCAACGGGGTTTCTCCATGTTGGTCAGTCTGGTCTCGAACTCCCGACTTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACTGCGCCCAGCCAATTTTTCTTGTTTTATAAGGGAGGAAGGTGAGGCTCAAAGAAGGACCCTGACTTGCTAGAACCTCACAGTTCACAGGTGACTGTGACTAGAATTGAGTTTTTTATCTGGCAGGCAATGGGGAGCCATTGAAGATTTTTGAGCAGGGCAGTGGCATAGCCAGGCTAGTTTCTAGAAGATGACTCTGGGGGTGCACTCATCTAAGGGAGAAATCAGGGCAGAGGAGGCACAGCGGGCGTGCAGCTCCCCCTGCCCCTCTGGCTGCCTGTCCTTGCTCTGTCTGTGCACGGGACCCAGGAGACCAGCCAGTGCAGCCCTGAGTCGTCTCTGACTCCCCCCAG
Seq C2 exon
GCTGTGTGGCTTGCGCATCCTGCAGCCCTACGCCGAGAGGATCCCCGTGGTGGCCACGGCCGGGATCACCATCAACTTCACCTCCCAGATCTCCCTCACCGGGCCCGGTGTGCGGGTGCACTATGGCTTGTACAACCAGTCGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187045:ENST00000406725:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(53.0=94.6)
A:
NA
C2:
PF0043115=CUB=PD(37.3=82.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains