HsaINT0169750 @ hg19
Intron Retention
Gene
ENSG00000187045 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:16517]
Coordinates
chr22:37466956-37469685:-
Coord C1 exon
chr22:37469572-37469685
Coord A exon
chr22:37467073-37469571
Coord C2 exon
chr22:37466956-37467072
Length
2499 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CCCCATCCCCTCTGTCCCAGGGG
3' ss Score
8.28
Exon sequences
Seq C1 exon
TTTGCAGAGCCACATTCCAGTGCAAAGAGGACAGCACATGCATCTCACTGCCCAAGGTCTGTGATGGGCAGCCTGATTGTCTCAACGGCAGCGACGAAGAGCAGTGCCAGGAAG
Seq A exon
GTAGGGCAGGCCTAGCCGAGTGTCTGGAGGGACACCAAAGGCAGTCTAGGCCTGCTACATGCTTCAGCAAAAGTTTCTAGCTTCTCCTCTCAACACCCACCAACCCCTCTGTATTTACATCTGTATGTCTGTCCATTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCTTCTGGTCTCCAATCACCGTCTGTCCATTGATTCATACAGCTACCCATTTATCTATGCATCTACTGACCTGTGCAACCATCAATCTCCCTATCATCAAACTGTCAATCTACCCATTTATTGGTTTGGCTGACTACTGGTCTATATGGCCACTGTTCCATCCATCCATCCATCCATCCATCCATCCACCCACCCATCTACCCACCCACCCATCCACCCATCCATCATCCATCCGTCCATCATCCATCCATCCATCATCCGTCTATCCATCCATCCATCCATCCATCATCCATCCATCCACCCATCGTCCATCCGTCCATCATCCATCCATCCATCCATCATCCATCCATCATCCATCTATCCATCCATCATCCTTCCACCCATCCGTCATCCACCCATCGATCATCCATCTGTCCATCATCCATCCATACATCATCCATCTATCCATCCATCCATTCATCCATCCATCATCCATGCATCATCCATCCATCATCCATCCATCCATCCATCATCCGTCTATCCATCCATCCATCATCCATCCATCCATCCATCATCCATCCGTCCATCATCCATCCATCCATCATCCATCTATCCATCCATCCATCCGTCCATCATCCATCCATCCATCATCCATCCATCATCCATCCGTCCATCACCCATCCATCCATCATCCATCCATCCATCATCCATCCATCCATCATCCATCCGTCCATCATCCATCCATCCATCGTCCATCATCCATCCATCCATCCATCATCCATCCATCCATCATCCATCCATCCATCCATCATCCATCCATTCATCCATCATCCATCCATTCATCCATCATCCATCTGTCCATCGTCTATCCATCCATCATCCATCATCCATCCATCCATCCATCCATCCATCCATCATCCATCCATCCATCATCCATCAATCCATCAATCCATCATCCATCCATCCATCATCCATCGATCCATCATCCATCCATCCATGCACCCATCCATCATCCATCCATCCATCCATCATCCATCCATTCATCCATCATCCATCCATCCATCATCCATCCATCCATCATCCATCCATCCATGCAACCATCCATCATCCATCCATCCATCATCCATCCATCCATCATCCATCCATCCATCCATCATCCATCCATCCATTCATCCATCATCCATCCATCCATCATCCGTTCATCCATCATCCATCCATTCACCCATCATCCATCCATCCATCATCCATCCATCATCCGTCCATCCATCATCTGTCCATCATCCATCCATCCATCATCCATCCAACCATCCATCATCCATCCATCCACCATCCATCCATTCATCCGTCAGCCATCCATCCATCCATGCACCCATCCATCATCCATCCATCCATCCATCCATCATCCATCCATCATCCATCCATCATCCACCCATCCATCATCCATCCATCCATCTACCCATCCATCCACCCATCCATCCACCCATCCACTGATCTCCCTAGCCCCCTGTCTGTCCACTGGTCCTTATATCCACACGTTTATCCAACCTTCTAGCTGTCTGTCAGTCTCCCTAATGGACCACCACTCCACCCATTGGCTTGTCTGCTCAGTCTTCTGTCTGGGTCTATTTATCCATCCATCCATCTACCCATCCAACTGACCAACTGACCAACACTTGCAGGCTACCCAGCGATAGGCAAGGTGCAGTAAGGAAGTGAGAATAAAACAGCAGAGATGCAGGCCCTGCCTTCCAAGGCTCATCTGTTAGTAGGAGGATATGATGGGTGACTCTCCTGCCTTGTAGGAAGATTGGAGGGCAGGGAGGAGGTCAGACATGAAAAGCTTCCTGGAGGAGGTAGGTGTTTGGCCCTTGGTGAGAGCTAAAACTTAAATAGGCAGGAGGAAAGGAGAGAGGCAAAGACCAAGTGGTGGAGTGGAAAGTTCTTTACAGTGAAGAGCAGGGAGGAAAATGTGGACAACCGGGCAGGGCCAGAGCCTGGGAGATTGCCAGGCTAGGTGCGGACCCTGGTCTAAAAGTGGAGGCACAGTTCTGCCTTCAAGTTCCACACTGGAGGGGGAGGCATGATCTTGTGGTCAGGATCTCCAGTCTGAGAATGGAGACACCACTTTGTGCTCAATAGGCCAGTCTGAGTGGAGGGGCTGTGGGGGGCGGGGGGACATGGCCTGCTTTTAGGAGACCCTAAAGGAGACTCAGGAAAAGACTCTCTAGTCACCTCCTGGCTCTTCTGGCTCCATCGTTCCTGCACCCCACTTTGGAAGGTTTCCTTGGGGCTCAGAGACCCACCTTCTGTGCCCTGCCCCCATCCCCTCTGTCCCAG
Seq C2 exon
GGGTGCCATGTGGGACATTCACCTTCCAGTGTGAGGACCGGAGCTGCGTGAAGAAGCCCAACCCGCAGTGTGATGGGCGGCCCGACTGCAGGGACGGCTCGGATGAGGAGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187045-TMPRSS6:NM_153609:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)