RnoINT0153424 @ rn6
Intron Retention
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119663671-119664627:-
Coord C1 exon
chr7:119664514-119664627
Coord A exon
chr7:119663788-119664513
Coord C2 exon
chr7:119663671-119663787
Length
726 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CCCGGTCCCCTCCATCCCAGGAG
3' ss Score
7.73
Exon sequences
Seq C1 exon
TCTGCAGAGCCATGTTCCAGTGCCAAGAGGACAGCACGTGCATCTCACTGCCGAGAGTCTGTGACCGGCAGCCCGACTGTCTCAATGGTAGCGACGAAGAGCAGTGCCAAGAAG
Seq A exon
GTAGAGAGACCCTGCCGAGGTCTCCAAGGAGATCAAAGGGGGTCACAGCAACACCTACTGCTACAAAGATCCCTGTCTTCTTATCCAAATACTACCAGCCTACTGTGCATACATCAGCATGCTCAGCTATCTGCTCGGAGGGCTGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCACCCACCCACCCATCCACCCACCCATCCATCCACCTATCCAGCCAACCAACCATCTACTCATCTATCTATCCACCCAACCATTTATTTCCCTAGTTATCTAACATCCGTCCGTCCGTCCACCCAACCATTTATTTCCCAGCTACCTAACATCCGTCCGTCCGTCCACCCACTCACTAATCATCCACCCTTCCATCTTTGCTCCTGACATACCCTTCCCATCCTCTATTTCACACAATCAGTTGCTCATACACTGATCCACTGACCTGGCAACCAAAACTGTGCTTCCATTAGACCAGGCAGCAGCTCTAGTCTGAGAGAAGGAGCACAACCTTGCTATCAGTAGGCCAGGCTGAATGTGGGGTGTCAGGAGACCCTAGGGGAGACTTGGGAAACCCTTTGGTGTGACTCAGATGCCCTCCCTAGTCTCCTGGCCTCTCCTGGTGCCATTTTTTCTGGGTCTCACTTTGGAAGGCTCCCTGGTTGCTCAGAGACCCACCTTCAGTGGCCTGCCCGGTCCCCTCCATCCCAG
Seq C2 exon
GAGTGCCCTGTGGGACATTCACTTTCCAGTGTGAGGACCGGAGCTGTGTGAAGAAGCCCAACCCCGAGTGTGACGGGCAGGCAGACTGCAGGGATGGCTCGGATGAGGAGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184:ENSRNOT00000000200:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGCCATGTTCCAGTG
R:
CACAGTGCTCCTCATCCGAG
Band lengths:
230-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]