HsaINT0169768 @ hg19
Intron Retention
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:30846]
Coordinates
chr3:111795723-111797725:+
Coord C1 exon
chr3:111795723-111795991
Coord A exon
chr3:111795992-111797588
Coord C2 exon
chr3:111797589-111797725
Length
1597 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
ACTTCCAATGTGTTTTGCAGATA
3' ss Score
9.72
Exon sequences
Seq C1 exon
GCTGTCAGATCCCACACCATGGACTGCACACCTCGGGATGTATGTTCAGGGGAATGCCAAGTTTGTCTCCCCGGTGAGAAGAATTGTGGTCCACGAGTACTATAACAGTCAGACTTTTGATTATGATATTGCTTTGCTACAGCTCAGTATTGCCTGGCCTGAGACCCTGAAACAGCTCATTCAGCCAATATGCATTCCTCCCACTGGTCAGAGAGTTCGCAGTGGGGAGAAGTGCTGGGTAACTGGCTGGGGGCGAAGACACGAAGCAG
Seq A exon
GTGTGTGTATGAATGAATGGTCATGCCCTTCCCCTGCAGAGGATGATAAGGTGTTTATGTAGTGCTTTAGGGTTCACAGAGAGGGTTTGTGTATATGATCTCCTTTGAACCTCCTGACAACTCTGGAAGGTTGGATTGGAGGAGGGTACTGTTATTTCTTTTTAATGATGCTATCCACCTGCTTTAAAAGAAGCAGGGCTCACCTTATAAAGAGGGAGAGGACTGTGTATGAGCAAGGCAGGATTGACTAGATAGTCATGGGCCCTTTTCAAACTCTGAAGGTTATGCTATGTTATTCACTAGAGAAGGAGCAATTCCTCCCTTTTCATTCAAAGAAATGATTCATTTATAAAGGAGAGAAGGACACACATGCACATCCCACTATGTCAACTCATAGGCAACAGTCTGGGAGACTATGTGGGTATGACCTGTGCCTGTGCAATTGGCCAAGGGATGAGAGTAAGGGCTGAACTTCAGACTGCCCTTAGTTTCCAGACCAGAAACTCAGGCCTGGAGGTTATACCTCCAGGATTTGGATTTGGTCCACCCAGAGGAGATACCTTTTTGCTATTTCTCTGACGGGAGAGGACATCTTTTCAATATGCATAAAGATCAGGCTGTATAGTAGGGAAGTCCCTACATCTACCCTGCCAAGGTTTTTCATGGTCCAGGATTCAAGGTGGGATTCTGAATATATAGTGAGGGGAAGAATCCAATGCTTTGTGAATGTATCCCCAAACGCTAGTGCTAATATTTTCCCTTGATCTTTCAATCACCTCACCTTCTTTTGCCATCCTTTTCAAGGGTTTAGGACACGTACAGCATCTGTAATTCCTGAACCTTGCCCTGTAGCCTCGTTTTGACACTCTAAAGTGTGGGCAACTTCTCAAAGGCAGCTTCTCAGTGCTTTCATTTAGTGATTGAAGTAGTAATACCACCAGCTTGGGTCCACTGAAGTCTCAGGGTCCCAAGGAGGGAAGGCAGCTGACTGTGAACACTTGTAACTTTGATAGGTTACTGTGCTCAGTGCTTTGATTACATTATCATATATCACAGGAGAAAAGCATCTGCCCAACCAACTTATCATGAGATGTTTTCTTTATAAGCCTGGGTATGTGTGTGTACACTTATTTTTCTGAATCATCTTAGCCAGGTAGGTTCAAAAGGAAGTGAAACAGCTATTTGCAAACTGTTAGGTTTTTATGGTTCATCAGAGACTCCCATATATCAGTTATGCTGCTCCATTTAAAGAGCTCTCTTGAATAGTAGATATTAGTAATAACTGTTGCTGACTTACCATCCTACGGAAAACAGGAGGGAAATGGTGAGGAATATGGCACAGTTGTTCAAGTAATTGAGTCAGACCTTGGGTCTGAATCTTGTGTTACTTGCTAGTGGTGTGTCACTGGGCAAGCCCTTTAATCTCCTAGCACTCGATTTCTTCATCAGCAAAATGAGGATAATAGTAGAATTTACCTCAAGGGAATTGCCGCTATGAGGGTAAAAGGAGATAATGTGTGTTAACTTTTCAAATGAAGTCCTGAATACATGCGGCCATTACCACTAACATCATTTCTACTTCCAATGTGTTTTGCAG
Seq C2 exon
ATAATAAAGGCTCCCTCGTTCTGCAGCAAGCGGAGGTAGAGCTCATTGATCAAACGCTCTGTGTTTCCACCTACGGGATCATCACTTCTCGGATGCTCTGTGCAGGCATAATGTCAGGCAAGAGAGATGCCTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-TMPRSS7:NM_001042575:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACACCTCGGGATGTATG
R:
GCACAGAGCATCCGAGAAGTG
Band lengths:
349-1946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)