BtaINT0150484 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57262140-57264639:+
Coord C1 exon
chr1:57262140-57262408
Coord A exon
chr1:57262409-57264502
Coord C2 exon
chr1:57264503-57264639
Length
2094 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CACTTCTGTGTATTTTCCAGACA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GCTGTCTGATCCCACACCGTGGACTGCTCACCTTGGCATGAATGTGCAGGGGAATGCCAAGTTCATCTCCCCAGTGAGAAGAATTGTGGTCCATGAATACTATAACAGCCAGACCTTTGATTATGATATTGCCTTGCTACAGCTCAGTGTTGCCTGGCCTGAGACCCTGAAGCAGCTCATCCAGCCAATATGCATTCCTCCTGCTGGCCAGAAAGTGCGCAGTGGAGAGAAGTGCTGGGTGACCGGCTGGGGGCGCAGGCACGAAGCAG
Seq A exon
GTGTGTGTCAGTGAATGCCCTCCCCTCCCCTCCAGATAACAGTTACTCATGTTGATGTGGTGCTTTGGAGTTCATGGAGAGGGTTTTCATATATGATCTTATCTGAGCCTTCTGACAACTCTGATAGATAGGCTGGAGGAAAGTATTAGAATTCCGGTTTTATGATGTTCTCCCCTTGTCCCCCAAAGAAGTGAGAACCTCTTCTTAAGGGAAGGCCTATGAGCAAGACAGGATAGTATAGTACAGGCCCTTTTCAATCTCGGAGGAGTTTGCTATGTTTTCTGCTATAGAAGAACATTTCCTCCGTATTTTTAGGTTCTCTTTCATGCAAAAAAAAAAAAAAATGACTCATTTTCATAAAAAAGAGAAGGTTGCCCATACACAATTTACTATGTCAGCTCATAGACAATTGTCTGGAGGATTGTGCAAGTATGTCCTTCACGAGGGCAACTGGGCAAGTGGATGAGAGTGAAGGCTGAAACCCAGATTGTCCTCAGTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATCTGTCCTGCCAAGGTTTTATGGCTTAGGATTCTAAATACACAGTAAAGAGAATAATCCAAAACTTTGTGAACATCTCCCCAGAGGTGAGAGCTGATGCTTTCCCTCGCTCTCCTAGTCTTTATCTTGGATTCCCTTATAGTCATTTCTAACTGCTTAGAACAGGTACATTATCTTTAAATCTTGAACCGTATCTTGGCCTTGCTTTGACACTCTCTAAAGAGTCACTATGGGCAGTTTCTCCAGTGCTAACTACCTACTTTTAGCTATTGAACTCACGAAATTCACCACCTGTCTGGGCCTTCTGGGAGAAGGCAGATCACTGCTCAAACACCTATAAACCATCAGGACTGTGCTCAGAGCTTTCATTACATCATCGTATATCATAAGAGGAAAGAGTTTCTTCAACCACTTTATCATGGGGGTTTTCTTTTCTTTTTTTAAAAAATCATTCCGCTGACTTTAATGTTTCTGATAGTATTATTGAATATTTACTACACACAAAGAACATTTTTAACATTCGTGCAAAGTACAAAACTGCACGACGCTGCTGTGTTCCCCAACCCCAGAGGTGGACGTGACCACCACTGCAGCTGCCGCGCAGCTGTGAGCAGGTGGAGGTCACTCCCACACCTTTCCAGAAGCCTGGGCAGCCTGACACTGCTGATGGGTATTTTCTTTACAAGCATGAGTGCGTCAATGAATTATCTTAGCCATATAGGTTAAAAAGGAAGTGAAAGGGCTGTATCCGAACTGTTATGTTTTTACGGTTCCTAGGATACTCCCAGATGTCAGTTATCATGTTCCACTTAAGGGGCCCTCTTAACCAGGGAGTGTTGGTAACGGCTGTTGCTGACTCACAGTCTTGAAGGCAGGAGGTATGTGGAGAAGGACCATGGCACCATGGCTTAGATGGTTGAGTCTGACATTGGCACCATCAGATGGCTCAGATGGTTGAATCAGACCTTGGGTCTGAATCCTGCTCTATTTTTTGCTATTTGTGTGCCATTAGATAAGTCCTTTATTCTCCTAAGCCTCCATGTCTTCATTTGAAAAAATGAGAATCATAATAGAATTTACCTAAAAAAATTGTTATAGAGTAAAAGGAGAAAATTAATAAATTGTCTAATAAAATAAATGTAACCATTGCCTTGATTTCCACTTCTGTGTATTTTCCAG
Seq C2 exon
ACAATAAAGGCTCCCCCATTTTGCAGCAAGCAGAGGTAGAACTCATTGACCAAACCCTCTGTGTTTCCACCTATGGCATCATCACTTCGAGGATGCTCTGTGCGGGTGTCATGTCAGGCAAGAAAGATGCTTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065:ENSBTAT00000020053:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development