HsaINT0170335 @ hg19
Intron Retention
Gene
ENSG00000120332 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:22942]
Coordinates
chr1:175054541-175063389:+
Coord C1 exon
chr1:175054541-175054630
Coord A exon
chr1:175054631-175063125
Coord C2 exon
chr1:175063126-175063389
Length
8495 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTCATGTGTTTTTATGAAGAAA
3' ss Score
4.5
Exon sequences
Seq C1 exon
GTCTGCACCCGGGGACTGAGTATAAGATCACGGTGGTGCCCATGAGAGGAGAGCTGGAGGGCAAGCCGATCCTCCTGAATGGCAGGACAG
Seq A exon
GTGAGAGCTACTTGGAGGCACTATGGGCATTTAATCATGTTTGCATTCTCATATTTTTCTTGGCTGACTCCTCTCTGGATAAGAATTCTGGGATTTGCAGACAGACGGGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACCTGATGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATAAGCTGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGACTGAGGCAAGAGAATTGCTTGAGCCCGGGAGGTGGAGGTTGTGGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAAAAAAAAAAAAAAAGAGAATTCTGGGATTTACATGTAGAGAGAGTCTATCCCTTTATGTACTGATGTCTATTTTTGGGCAGGGAAAGGGAAGCAAACTTTTCCTATTTCAAATTTTTCTTGCCATTGAAAATCTCTCCCAGGGTCTTGGAGTCAAGGGACAAGACTGTCTGACACCGTTCTGCTTATTTTAATAGCTTCTATCACCGCGTTGTTTTTAAGGCATTTATTATCTAGGACATAGGCACATAGCTCCTTATTCCCTAAAGACAAGTGATCTATAATTTTCTTCTTGCCACACCTGTGTTTTTTCCTGATGCCCACATTCAGTAGACTCCTCTAAAATGTCAAAAGATATTAAAAACCCTCACATGGGAGTAGTGGTATGTTGTCATCTGTGTATTGAGAAAATATATAATGATAAAAGGTTACAAATCAGTCATATTTGACAATAAGTTTGTAATTTATTAATCAGAACAGAATTGGAAAACATGGTAGGCATACATACGAGACATCCTAGGTAACTTTTAGTTTTTAAACCATGCTTGAGCCCATATTGAATTGTGAACTTCCTCATTAACTCTGTGCTCCTGCCTTCCCCATGCTGGAAACCTGTGATCTAGAACATAGTGCCATTCGGGGAGACTAATCCTTGGAGCTGGTAAAGAAGGAGTCTTTGAGTTTTGAGTCTTCGTTGAAAAGTTTTTTAGTTCTTTCCAATTCAGTCCTGGAAATAGCTGGTTATGGTGGTGAGAATAAGAGGTGAGATGTTGTGAGAATTGAATTCACTATTTCAGCTGCCTAACAGATTGCTTATCTGCAGTATGAAACAGTTATAGTTGGGCATTTATAATGGAGAACATATAACTTAATTTACAAACTAGACAAGGTAGACTGTACAGTCTGCCTGAATAGTGGACTAGGGAACTGTTTTAATGGGTTAGAAAATGGTAAGTACTTCTGTGCTTCCAGTGGCATTCCCTGTAGCTGTGAATTAATTGAGAGCTTACTGAGTGCCAGGCATTATAATCACTAAGCACTTTTTATGAATATCTCATTTAGTTCTCACAGCAATCCAATGAAGTAGATACTATTATTATTTCTCTGCCACATATAAGAAAACTGGAGAAGTTAAGCTCAAGATTGCCCAGCCAGGAAAGGACAGAGCTGGGATTTGAACCCAGGATACCCAAGTCTAAACCTTTGGGCTTAGCTACTGCAAACCAAAAAGTATCTGAGATAGGCCTTAATCAACTTAGAAGTTTATTTTTCCAAGGTTAAGGACATGCCTGGGAGAAAGAAACATGGAATCACAGAAACAATCTGTGGTCTGTACCTTTCTCCAAAGATGATTTTGAGGACTTCAATATTTAAATGGGAAAAGTGGGCTGAAGAGGAAATAGGGAGGGTATAATTCCCATGTTGGAAGAGAAAGGAGCAGGTAGCGGGATAGTCAATTACGTGTTGAGTACATTTGCACTTTTCTCAGGATAAGGTGAACGTGGAGTAGCTACCTGTGGAGATATTTAACCTTTTATCCGGCGTAGGAACAAAAGGAAAGGCAGCTTCTTGCATAACTCAGCTTTCAGCTTTATTTTTTCCTTTTGGCAGAGTGAATTGGGGTCCCGAGTTTTTTATTTTCATTTCAAACTACAAAGCTAAAGTGCTTCCCACTTTTACCTTCCTGTAAGAGATAAACACTTTTTCTTCTCTTACACAGTCAACACAACACAGAACATTTCACCTCTGGAAGTGATTTTTCCCCATACACCAGGGAGTTTTCCATCGGACACAAACTGGATGTTCTATAATTCAATTCATATCTGACATTGTCTCCCTGGAAATAGCCTCAGATCCCACAAGTTAAAGGCCCAGTCCCACAAGACTTTCCTCACTTCAGATGCCTGTCACAGTCCCCAGGTTAGGACCTGTACTTCTGACCAATCAGCTAGAAATTGGGGGTTCTTATGACTCCCCTCCTTGAGTTCCATTAATTTGCTAGAGCAGCTCACAGAACGCAGGGAAACACTTTACTTACGTTTACCTATTTAGTATAATAAAGAATATTACAAAGATCCAGGTGAAGAACCAGATGGAAGAGATGCATAGGTCAAGGTACGTGCTTCCATGGCCTCTGTGGGTGTGCCACCCTCCCCAAACCTCCACTTGTTCAGCAACCAGGAAGCACTCTGAACCCAGTCCTTTTGGGTTCTCATGGAGACCTCATTATATAGGAATGATTGATTACATCATTGGCCACTGGTGATTAACTCAACCTTTAGCAACTGTGAGCGCCTCTCTCCTTCCCCTTGTTAGGGGGGTGGGTAGGTGGGGCTGGTAGTTCCAATCCTCTAATCACAATGTTGGTTCCCTGGAAACCACCCCCTTTCTGAGGCTACCCAGGAGCACCCCTCAACCCCTTACAGCAGTCATCTCATTAACATACAGAAGACACCTCACTTTGGAGATTCCAAGGGTTTTAGGAGCTGTGTGCCAGGAATCAGGGACCCAAAACCAAACATGTGTTTCTTGTTATAAATCATAACATCACACCTCCCCTCCTTCTTGCCCATTATTTCTGGTTAATTTTCATACTGTTTGCTTCCTAACTGAAAAATTTTCTATGATTCCTCACTGACTGAGGAGGAAGCATAATGCTTTTATCTTGGCCTCCGTGGCCCACCCAGCCTGGGCCACTGTTATTCTCATTACTTCCCCAGGGAAAGCCTTCCTGTAGCCAGACTGTTTGTGGGGTTTCCTAACAGAAAGCTTATCTCTGCAAGTGGGTTTCTGTTGTTACTTAGCCTGGAAAACCCTTGCCATTATTTCTAGCCACAAATTAATTTAATTCAACAAACATTTATTGCAGGATGTATCTGGGCCAAAGAGACCTGGTCCCTTTAGAAATTTCCAGAGCTGATAAGCCATGGTCCTTTTCCTTCAGGGGATCACAGCAATAATGTGACGTATCCTTCCAGGCTGTGCTCAAACAGTTTCTCCACTGCAGCCTTCTATGACCGCATTAAATGTCAGCCAGATTTGTTTCTGAGGTCTGAGAGCATTTAATCACATATGGCCTTGAATTGCTAGTTAGCCTTCCACCTATACTGGAATGTTGTTACTCAAAAGTGTTTTTATTGTCAATTATATCCTAAAACCAGGATAGAATATTTTATTGGATTGCAAATAAATTTGTGTCATGTGTTTTACCAGCATCAAAAAGAAAAAGACACTGTAATTTATAGGGTCAGGAAACACTCTTAAACCTGGCTAGACTGTTAATTAATTTAAGGGAAAAGAAGAATCTCTGTTTTCTCCAAACGTTTTGCATCCCACCAGGTGGAAAAGGATGCTGGAACTTAAGAACAGCCTAAGCATGTGCAGGAGGAAACGAGGAAATGACACCGTTCAGGGATTTTTCATGTAACGAGGCACCCAGTGTAACTAACACCATGACAGGGAAATGGTTGACTGAAATTCCTCACCCTGTTACCCAACATGCTCAAAGTGCGCTGGAACACCTTCCAGAAAGGCCAGCCTCAGAAGCAGGTCAGCTTAAGGAGCAGCAAGCATACGCCAGGCCAGTGTCTCTGGGGGATTGGCGAGGGGAATGTCCCTGGACTTCTGCATCATACCCTGACAGCTATGCTTCCCATTCAATGAAAAGAAAGGGAGGCTACTAACTGAGAGGTGATGTCATTCTTTTGTCCTCTATCTATAAAATGAAGAGTTGGACTAAATGAGTTTAAAGTCCTTTCTCTTTTCTTATGATGATGGTATTCTGTTAATAGCTTCATGCTTTTCCCTGGTGTGTATAAAACAAAGCATGCTTGCTTTGTTATAATTTCACAAGCTCCCATGCACAGCAAAGGTTATAGCCTAGAATATTCACTTGTCATCAATTTTCTCAGAACTTTCCTCCTTAGACTATGCTGTGAAATAGCAGTTTTGCTTTTCTTAATATCTTTTTCACTTTTTACTGATTTCCAAACACAATGTTCCATTTGAAATGGCTTAGCCCCTAAAACTTTGGAAACTCCTTCATGTCCTAGGCTGAGCTCCTGTCACCATTGAGAACTCCTGTCTCATACACAGCCACCAACACACACATTTAGCATCTGGACAACAGCAACAATCTCTATCATTTGCGCGATCACTGTATTCTAGTGGGCTTCTGTATATTGTGAGACTTTGTAAATATTATCTCTGGTCCTTATAATATCAATAGGATTGTAAGCATTATTATTTCCATTTTACATATGAGAACACTGAGGCCTACAAAGTTTAGGAGACTCAGGGTGAGCTAGTGAACAGCTAGCTGGTACAACTTAGGTTCGCTTGAAATCAAAGTCAATAACCTTTTTAGAAGCAAAGCTGGAGGACAACAGGAAGAAGGGCTGACCTCTCTGAGTGCATTTTCTACAAACGATGCCTTTTGGATAATTTTGTTGCCACAATTGAAAGACATTAGAGGAGGTCTGTGAAAACAAGAGTACAGAACGTGTAGGTATTGTGGTCTCAAGGCACCTCTTCCAGGAACCCACCTTCAAATCAATGACACAGGTCCTGCCCCCCGTGTCTTCCTCCCCCAAGATCATTTCTCATAGATTTTTCATCCCGTCAGTGCCATCTTCTACTGCACCAACTGGGAGATTCACAGGTGGAAATTGTGAGTGGAGAAACCTGTTCCTAATGCCTGTGACTATGTGCTCAAGTGTGGACAGGAGCTTTCGGATGTTACAGCCTAGTGTGAAGACAGATGTTCCCTACCCAACTCTGTGGCAAATCTTGTTATAAAGTGGAATAAGCTTTCCTGATGTGAACAGAGCTTCTAATTAACCTCCTCCATATACTGTGTTCAGGTTTTGCAAATTAGATCTCTTTGAAGTGAAGTGCACCTTTATTCTAACTAACGTATGTACTCACAGGCGAGTCCCACCTATCCAGTTTTACAAACCTTACTTTACATCTCATTGACCTTGAATGTCCCTAAGAAAGGTCCCACCAGGGCTGCTAGTGTCCAGCAGTTGGGAAGTTCCAGCCTGGGGAGGATGTTGGGGCCAGGGTGGGGAGAGCCTGTCTTGTAGTAGAGGCTACAGCTGTGGCTAATCTGTGATTTAGCCAGCTGCTGCAGCTGCTGAAAGGCTTCCTTGCATGGAAAAACTATTTCATAATCTCCAGATCCCTTTTTGGTAGAAAGAGGTTTCAGTCCTGCAAAGCTGGCCTCTTCCAGCAATGTGGCCTATCATGGAGGTCCCATCTCTGAGGCCTTCCTCCCATTCCTGTGTCTCAGCACCTGATCCCCATCGGGGGAATGGTCAAGGAGAGCAAGCTCTGTGAAGAGCCCCTTCTGAGTTGAGTTGCTGTGGTTAGAGAACTGAGAGAAAAGGGAAGGCAGGGGGCCAAGAGCTGTGACTGGCACTGTGAGCTTGGAGAAGTCACATCTCCTCTCTTAAACTTCTTTAAACCTCCAGGTCTCCTATAACCCTGGGCATAATATGATTCAGTTTTACCTTCCTACTCTTCATACCCAAGATGCTGTTTCCTGGCTCTTCTCCATCCCTTGAGTGCTCTGGGACTGGTGGGAGAGAAAGGAGCTACAGAGCTGGCTGCTGCTTCCTCTTTCCACCCATGTGGACATGATGGATCTTTCCTTTATTTATTTACTTTTATTTATTATTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGAGACTGAGTCTTGCTATGTCACCTAGGCTGGAGTGTGGTGCATGATCTCAGCTTACTGCAACCTCTGCCTTCCAGGTTCAAGCCATTCTCGTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTACCACCCTGCCCGGCTAATTTTTTGTGTTTTTAGTAGAGACACGGTTTTGCCATGTTGGCCAGGCTAGTCTCGAACTCCTGGCCTCAAGTGATCCACCCAGCTTCACCTCCCAAAGTGCTGGAATTACAGGTATGAGCTGTTGTGCCTGGCTATGATATATTTTTCAATACACACAGGCAGCACCAACCCCACAAAGCCACAGGCCTCTGCTGTGGGTCCTGGAAGCAATGGTAGCAAGCACCAATCTGGGGCAGGGAGATGGGGTGGGAGGCACTGCTGGGACCTGGGGTTGTACAGATGTGGATGCTTTTGAGAAGGTGAGGGCCATGAACTTCACGAGCAGGACTGCTAGGGTGTTCTTGCTCGCTTCTTCCTGCCTCCTTAGTTTTCCATTTCCACTTTGTCACTAATTTCCCCAGATTGAGATATTGGTTTTGGATGGCTCTTGTCATCTCTTCCCTATGACATGCAGGATCATGTCTTGCACAGAAAGTTGTTACAGGATGGGGAGAGAGTTCTCTCTATCGTTGCACTCTTTTCCTTGACTGTCCTCTTACAGCCTGCTGGAGCCTCCAGAGGCCCTGGCCATGGGGTCAGACAGTGGGTGCCTGCATCCTAATTGTCCACTCTGTCATTCCTGGAGGCCCACAAGTGGCAGACTATTGGCTCTGAGCTCACAGTGCCAGTCACAGTGAGACTATTGTCTCACAAGGCAATAGTTCAAGAACGAGTTTCTCTCTCTAGTTACTGTCTATTACTGCTGCTGGATTTCATGTCACAGTAACCTTTCAGTTCACACTTTACTTTATTTATAATTTATTATTATTATTAGTTGCAAAGGAAAATGCTATTGATAGTGCTGCTTAGGACATAGACATATAAAGTGGAAATGTATAGTCTTTGTTAGATAAGAATGAGTTCAAATCTTGGCTCTACCACTTAATGTATCCAAAAGCAAACGCTTGGTCCTCTTCCTCTCCCCACTCCCTACTGCAAATGCTTCCCTCCCTCAGATATCCCTGTCTCTATAAATGGCCACTCCATTTTGCAAATTACTTGGGCCCCAAGCCAACAAATCATTCATTGTATCCCATGTTGAATCCATCAGCAGATTATGACAGCCTTACCTTTGAAAGCTCCAAAGCCAGCCTTCCCCATGACCCTCATTACTGCTGCAGTGGCCTGCACCCCCACCATCTTGCATATACACCACTGAAGCAGCCTCCTGTGTGACCTTCACTCTTGGTTCACTAGAGTGAGTATTCTCCTCAGAAGCCAGAGGGATCCTTTGATAGCCCAAGTCAGATCAGGTCATTCCTCTTTTCAAAGCCCCCAGAGACTTCTCTTGTTACTTAGTGTAAAAGACAATGTCATTACAATGGCCTTCAAGGCCATCCATAGTCCACTGTCCCTCTCACTTCCCTGGCCTCCCCTCCAGCCGCTTGACTTAACTCTGTCTAGATGCACTGGCCTCCTTGCTGTTGCTTGAACACATGAAGCAGGACCTTGGGTTAGCAGGGACATGTGTCAAAGAAAAAATGAGAGATTTTCTAAGGTCATGGGCTCAGGATATGTTCTTGGGAAGCACAGTCTCTAGGACACAGCTGGCATATTGTTCTGGGTTAGTTCTTTTTGAATATAAGCTCCACATTGGTGGGGATTTTTGACTGTTTTGCTCATTGATAACTCTTAAATGTCATTACATTCCCTGACACATAATGGATGTTCAGTGAAGTGCTGTTGAATGAATGAAGTGAGTTTTGGAGATTTGTATTTGAAAAGAGAGAGAAGAGCATGTGTAGATAAAAGTGCCAGGCCTGGAAACTGTGATTTGGAAGCAATGAACAGGGGAGGTGATGTTGTTTTGATTTGAGGAGAACTAGGGAGGGGAATGATGACTCTTCTTGAATACTTGCTGGTTGGTCTTCTGGAAGGGGAATTAGATGTATTCTCTCTGTCTACCTAGGGTAGACAATTAGAAGGAGTTACATTTGAAGGAGTTTTCTCTAATATGTTCAGTAGTCTGCAAATGGAAAATGGAATGGATTGTGTTGTCTATTGGAGAGTCCTTTCTTAGTTTAGGGTTCAAGCAGAAGCCAGTTGTCCACTTGTCACTGATGATGGAGAGACCCCCTTGTATTGCATAAACTATTGAACTAGGTCACCCAGGTGAACTAGATCTTTAACAATCTATGATCTTGACTAACCAACTGGTTTCTCTGATTTTTCTTTCTCATGTGTTTTTATGAAG
Seq C2 exon
AAATTGACAGTCCAACCAATGTTGTCACTGATCGAGTGACTGAAGACACAGCAACTGTCTCCTGGGACCCAGTGCAGGCTGTCATAGACAAGTATGTAGTGCGCTACACTTCTGCTGATGGGGACACCAAGGAAATGGCAGTGCACAAGGATGAGAGCAGCACTGTCCTGACGGGCCTGAAGCCAGGAGAGGCATACAAGGTCTACGTGTGGGCTGAAAGGGGCAACCAGGGGAGCAAGAAAGCTGACACCAATGCCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120332-TNN:NM_022093:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.461
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.8=71.0)
A:
NA
C2:
PF0004116=fn3=WD(100=88.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)