MmuINT0163308 @ mm9
Intron Retention
Gene
ENSMUSG00000026725 | Tnn
Description
tenascin N [Source:MGI Symbol;Acc:MGI:2665790]
Coordinates
chr1:162060815-162069469:-
Coord C1 exon
chr1:162069380-162069469
Coord A exon
chr1:162061079-162069379
Coord C2 exon
chr1:162060815-162061078
Length
8301 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTTATTTCTTATGTATGAAGAAA
3' ss Score
3.05
Exon sequences
Seq C1 exon
GTCTGCAGCCTGGAACGGAATATAAAATCACAGTTGTGCCCATCCGAGGTGATCTGGAGGGAAAGCCGATTCTCCTGAATGGCAGGACAG
Seq A exon
GTATGGAGATCTCATCTTCACATTTTCAGATTTTTCTTGTCTCCGTGTGACAGTTCTAGGATTTCCATGGAGCGGTGCTATGGCTGCCTGGATGGGTGTCTATACTGAGGGGCAGAAGAACAGAAGCAAATCTCTCCCGTTTCACTTCTTTTCATGTCCTGGGGAAAAACATACCTGGGATCTTGGAGTCACGGGGAGATGCTATCCCTGATGCCTTTCTTCTGACTTTAATTGCTTCAATCCCTGAATCAAATTACCGTCTCAAGGCACTTAATAGGCATAGAGAACTTCATTCCCCGAGGACAGATGAACTAGACTATTTGTCACATTGTATTTGTTCCTAATATCCACACTCAAGCAGTCTGTTCTGAAGTGGGAGATGATGTTTAAGACCCTCCCACGGGAGTCATGGTATAGTTAGCATTTGTCTATCAAGAATAAGATGTTGTGCAGCGGTAATTGGTCAAATATCAACCAGAATGGAATTTGAACACATTGTAGGTTTAAATGCATATTGAACTGTGCACATCCTGCATAGAGAATGATGCTCCTGCGTACACAGATTGAGACCTGGAAGCGACTGGTGATTGGAGCCTGCAAAACAGGAATCTTTCCATTTTGAGTTTTTCTTAAAGAGTGGCTTCATTCTTTCCGTTAAGTCTTAGAAGTAGCTAGGTATGGTGATATAGTAATGACGCTGAATGGTTCGAGTTAGAGAGCTGGGCAATTACAATGAAGAGCTGTAATTTAATTTATGATCCAGACAAGATGGACTGGGTAGTTTGCCTAAATGGTTGATGAGACATTTGAGTGAGTCAGAAAATGGCAAGTACTTCCCTTGCTTCTGAAAGCTTTCTCTCTGGCTTGATTGAGAGGTTATAGATCAACTGAAAGGTTGCTACGTGCCAGGCAGCAAATTTCCTCAGCATTTTTCATGAGTTTTGCCATTTAGTTCTCACAGTCAGTCTATGGATGAGCTACTACTATTATTTCTAGGTCACATGCATACAAAAACTAAGACTTGAAAACGTAAAGGTCAAGATCACCCAGCCAGGAAATGGCAAAGCTGGGTTCGAAAGAAGGCTGCTCACCTCTAAGCCTTGGTGCTTAGTGACAGGAGCAAATTGCTGCTTAGTTGATCCTTCTGTTGAGAGATGAATATGCTTTCTCCTCTTACACAATCAACACAACACACAACCGTTGGCCATTGGTGTGCATGAGCGCGCGTGCGCGCGCGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTATTATTCCTCTTATATCCAGCAATTCTCCATCAGACACCAACTGGGTATCACACAAGTTAACTCACTTCTAATAGTACCTATTAAACATACCAGTAGATTTGGACTGAAGGGTCAGAATTTAAAAATGGGTTCAGGAGGAAACTGGAGGACTGCCTTATTAGAATTTGAAACAACATCAGTAGGGAGGCCAGTTGTGGACCTCAACAGCCTTGGGAGGAGGTGGGTAGAGAAGAGGAAGAGAGTCTTTTTGAGCTCTGGTTGAAGAGAACCGGCATATTCAACAGTGCACGCTAGCAGGAAGCTGCATGGTCGAAGGGGAGAGGTGCTTCAGGGAACAATGAGAAAGCTCAGAATGTCAGATGTTGGTTGGTATTAAAAAATAATTTAAAGAAGAGAGAATGAGTGAACGAACAAAATAGGAAAAGTTTTTCTTTTTTTAGTCTGAACTCAAAAAGCAGGCAGAGATTTAGCAGAGCCTGATTCTCTCACCACCTTATCATGTGTTTGGCTGAATCAGGTTTCCTATGGGTAAACTGGTCAGGAGATTGATGGGGTCCAGTGGATTAACGTTTAGGGGAGAAACAATAGCATGCTCTCATCTTTCCAGTCCATAAGAAAGTCAATCTCCACCTAGAACAACCAGGGAAAGAGGAACCTCAGCTTCCATTCTTTTGACCAGAAGAGTGTGTTATGCTTTCCCTTAATAGGATTCAGGGAAGCCCCGAGACCTCCATCTTTTCATGTGTTATTTTAAACCCCAAGGAGGTTAATTGTGAAGCTTCCCTTCCTAATGTTACCCAGGGGAAACAGGATGTAGAGCCCAAAGCATGATCAGGAGGGAAGATCCACCGTCATTGGCCTACACCACGACTAATCCTGGTAACACAACTTCTACTTCTTGACGAAAGCCTTTTATAGTCACATTAAATGTCACAGCCTCTGAGTTCTTACAACAATTAATTGCGTGTGCCATTGAATTGGTAGTTAACCTTTCAAGTATATTATCCCAACTAGACTATTAGCATCTGAGAAGTGTTTTTATTGTCAATTATATCCTAACATCAGGATGAGACACTTCACTGGATCTCAAATAAATCTAGGGTATGTGCACTACTAAAATAAAAAAGAAAAAGATCCTATCGTTTCTGAGGTCAGGGAAGACCATGAGTTAATTTAGGAGATTAAAAATTTGTTTTCTCCAAATTTTTTGTTTCTTGCAAGCTGAGAAAGAGCACCAGGATTTAAGAGCAGTGTATGCGTACGCAGGAAGGGAATGTAGTTCAGTTATTTTCCACTTAACAAGTCAACCAATGGAACTTGTTAAAACAAAACTCTTAAAACTGAAGGGTCTCCAAATAAAAGGGTTTATTGAGCTGTTACAGCTGCTAGACAGGAACAAAATAAAACAAAACAAAACCCTGACCAGGTTCTTGGACAAGTTCCTTTGACTATTAGCAACAAAGCTAAATAGTAGTTGAAACTATGTGAGTGGGACGCAGAGAGCCAAGAATACATTTATAAAATCCTGGGAAGGAACACGTATGTGCATAACACTGAGTCTACACTGACAATAGATAAGAGAGATCAGATTATCACGGACATCGGGAGATGGAATTCCAGCCCATAAGAATGTAGCTTGAGGAATTCTCCCAAGAAACCTCTGCTCCTTCCGCTACAATCAGGACCTTGAATTATGCTGGAGGAAAAAAAAATGAGGACAAAACAATGAAGCAAACTAGGCTTTATTTAGGAAAGTAGAGAACATAGTGAGGGGACAGGTATAGGCTTCTCAAGAGACAGAGACTAACAAGGATTTAACACTATCTACAAAGGATTTTGAGGTCAGACTGGTCAAAGAACATGATCCCGTATCTAAATATAAAAATCTAAAATTAAAACATTGAATTAAAATATTCTAGTATACTTATTTTTTAATTCAAGAATTGTTTTACTCGTCAATGAGATTATAAGGTGTTTTATGAGTGTACTCTTCAGGTTTATGAATGAGCTAAGGGGTTGCTGAGAAGAGAAGTTTAAGTCAAAAAGGTCAAAGGAATTATTGCTGTACCTTATATCAAAACAAAATCATGACCTTTTGACTGTAAACTCTGTTCACAACCTTTTTGAGACTTTTTTTTTTCAGAAAAAAAGAAAATCCTCAGGTTTACAGACAATGAACAATCGGATATGGTTGAACTCAAAGGGCACTAACATTTTGTCCTTAAACATTAAGCATGGTTCATTACTTGTTTTAACTCTCCAGTTTCATATATCTCTCAGGAAAAGTAACATTGTCTCCCTGCAGGCAATCTTTACAATGTGGGTATATGAAGACTGCATCTTTCCATTCTCCTATCCCCATACGTTTTTCTGTCTCCCTGTCCTGCTTTGGGATTATTCAGAGTTGAGAAAACCTTGGAGTAAGAGAGCAATGTTTGTCGCTCTCAATTATTCAGTTTTAATACTTCTGGAAGCTTTCAAGTAGGCAGGGCGTGGTGATTCTGGTCAGTGACTATATTTAAGACAAGGTTTCTATGTAGCATTCAAAACCAGGGAGAGAGATCTTACCTTTAGTTTCACCCACAGTTAATAACAGATTCACTTCCTTTACCATCTTCCTCCCCCCTCCTTTCCAGTCATCCCTTTATCAAGCTAATATCATGAGAATGACAAGGCTGATAGAGGTCAGTGAGGACCGCCAGTGTGCGGCAGGCGGGAAGTTGTAGCTGAAGGAGGCCTCTGGGAGCAGGTTGGAGAGATCCTGTTTTGTAGATGAGGCTACAGCTGTAGTTCATCTATGATTTGGCCCACCACCGCAGCTACTGGAAGATTTTGTTGCATGGAAAAACGACTTAATGTTCCCCACATCCCCTCCTGGCAGACAGGGAGGGTTTGGTCTTGCAGGGCTGGCTTCATGCAACTGTGTAAGTGTGTGGGGTCCATCGGTGGGGTCTACTTCTCATTCTCAGATGCCAGCATCTGACTGCTGTCTTTGTTCCACCCTGTGAATGATCAGGGATCACAGCTCTGTGAGGATCCCCCTTTCTAGTCTATGCTGGTAAAGAGTTGAGAGAAAGGGGGTGGGGAAGAAGGCGTCACTGAGTTCTAGGCTGGTTCTGTCTGGCAGGACTTCTGTGGTTTAACTTCTAGATCTAGAGTGGCTGTAGACATAGAACTAGATTAAATTTTCTTTCCTGGTGTTCATAACCAAGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTCTATCTATCTATCTTCTATCTATCTATCTATCTATCTATCTATCTATTTATATTTTAAACGCTAGTGTTCTTTAACTCAGGTCTAGAAGCTCACCCCACAGAAAACCCAATGTTGGGAAGATTAGTTTTTCGTGTTTTCTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGGGTAGCCCTGGCTGTCTTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGAGATTAAAGGTGTGCGCCACCACCGCCCGGCTGGGGAGATTAGTATTACAGTGAAAGAAGTGCTTTATTCAGTGGGAGCTTTTACTTGAAAATCACCCAGGAGGCTAAAGAGTTGAGGAGTTACAGACATAGGACCAGACCAATGAGGGAGAGACACCCCCTCCAATGAAGAAGAGAAAGGCTACTGTCTCTTCTCTGAACAAGCAGAGCTCTTTCAGAAAGTCAGATGCCTCGTCTTTTCATTGTCTCTTGTTTTCAGCGGCATCTGATAGGGTTTTTTTCTTTCTATAAACCCTGAAGGAGAAAGAGAGACTTAGCAATGTCTAGGTCAAGTTAATCCTGCATTATAACTTTAGGCAAAGCATTTCTCAAATGATCAATATCTCTACATGCAGAGCAGAGTAGAATCTGACCCAAAGGTTAAAGCAAAAAAGAGGACAGACACAGAATGAAGGCAGAGATAGCAAAACTTTCCATCCCACATCAATCACCCATCAGACACGTGCACAGAAAAGCAGAGTCGGTGTTCTCAGGAAAGAGTTCCTCAAGTGCTTGAAAAGCAACCTAGGCTACTGTTAGCATTGCAACAATGCACTGAATGCTTTCTACAGCAAAGCAAATGGAAAACTACAGTGTCTTTAGCTAGATTATGTAACTTATGAGGTTAGTGTTTTTTTTTTTAAATGAAGGGCAAATGATTCTAGAGGATTTGCTTAGGGTTTTCCTTGGCAACTACTCCATCTCTTCAGTGTTCTGAGGCTGCTGAGGGAACACAAGCTCCAAGGCTGGCCAGGTTGGATCTCTCAGTGCACATAGACAGTTCTGACGCTACCAAACCACTGGCCTGTGCTGTGACAAGATGTTGCAGGCTAAGTACTGACAGGGGCACGTTGTGGGAGTGAGAGGTACTGCTAGGATGCTGGACTTTGTAGGTGTGGGTGGGTCACTTTGGAGAGGATGAGAGTCAGGGCTTTCAAGAGCTGGATTGCACTCCTCTCTTTGTGTCTTTAATCTTCTCTTCTCCTTTCATCACCATTGCTGAGACTGAGCTATGGCCTGGGGGTGGGAGTGGGGCTGTGTCAGCATCCCTGCCTCACAAGCACAGAGACATTGGGGTAAGGGGTCAGAGAGAGAATCCTCTCTGTTGTATACATGTCTTCTTCTGAACGATCTCTTAGAGCCTCCTGATGTTGGCATTAGGGATCTTCAGGCTTCTGCATCCAGACACCCCCTCTCTCATTCCATGGAACTCCCTTTGCCAGTGAGATGTGTCTAGCACCCCTACAGCCCAAGCTGTTTTCTTTCTCTTTAGAATTCTCCCCAAGTTCTTATCAACTACTCCTATGTTATTTCAGGTTGCAGTAGCCTTTCAGAGCATAGTTTATTCCATCTACAATTGTTAATGTTTATCCCACATAGATTGAAGAGATGCCAGTCACATTGGATTGGATCCACCTAAATGACTCCATTTTAACTTATGATCTCTGAAAAGACCTCAGATGCAAGTAGACAAAGATTGTTAGTGTTGTGACAGTTGCTAGTATTTATTACTGCCGATCTTACAGAAGTTATCTAACCTGTCTGGGCCTAGCGTATACATACTATTCTAAGAGGGGAAGACTATTAGTTTTCCTAACTTGTGAGGCACCTGGTGAATGCCTTGTGTTTTTACCATGGGATTTGGTAACTAATGTATGAAAAGCACCATGATCCTTGGTGTGTGCTTGGTAAATGGCAGTTGACTTACTAAATGAAATATGAACTGCCTCTGGTAATGGAACACATTTCATCTTCTCTTGCAAATAAAACACTGCCCTTATGTTTGATAAAGGTGCACTGTAGCTAAGGTTGAAAAATGGGACTATGTGAAATTGTAACTTCTCTCTGAAAAATCCTTGGCTGAGAGACCAAGAATAGATTGAGGGGCGGGGGGGGGGGGGGGGGGGAGGGAGAGAGGAGGAGAATTTAGCTGCTTTAGACCAAGAAGTTGTTTTGTGGATTTTTCAGTTAAAAAGATGTAGATCCATATACAGAGGACATTCTAGGGTCATGTCTTAGCGGTGTTCTGTTTGACATCTTTATCAGTGGCCTTAACGAATGTGTATTGATGGCTTGCTTATAAAATTCTCCAGTGTCAGGAAGATAGACAGAAAAGTGAGCATATTTAGACAAAAGATTAAAATATAAATGGAACTTTAAGAGGGCAAAACTAATGAGTATAAATGTTGGCCAAGGACATTATTAAACATGCATAGATTGGAGATGGTGGGATTTAACATGGAAGTCCTTATTCTTTGATGCATATCAGAATCACTTAAAAGTTTTGTTTATGTGTTTACTAAATTATTATATATTTTTAGATAAGGCTTTACTCACTGGATCAGTCTGGTGTTGAACTTCATGTATAGCCCCGGTTTATCTAGAACTCATGTTTCTCCTGCTTCAGACTTCTAAGTGCAGGAATGATGGGCTTGTCTTACCACAACCAAGGAGGTGTGTGTTATGTGGTGATTCTTGTTTCTAATCCCAGCGTTCAGAAAGCTGAGGTACAAGGACTGTGAGTTCAAGCCAGGCTGGGCTATATAGTAAGATTCGCTTTTTAAAGAACTCTCATAACTCCCCAAGCATAAAACAAAACCAACCAAACAACCAAACAACCACAACCAACCAACCAACCAACCAAAAGTCCCTGAAAGAAGCTAAGCGATGCTAGGGCTTACTCTGCATTTCTTGAAGTGGAATCTCTGCTGGCTGTACTTGGCAGGGACCCAGTGTTGGCAGAAATTGAGGACACCTAGATAGGGGGACTCCTGAGGCCACAGGTACAGGGTGTGTCTTCAGGATACAGTTGGAAAATTGTTTTGAACACCAATGACCTCAAAAAAGACTGCTGACTGTCTTATTTATTTATAATTGCCGAATGCCATCCTATATTCCCTGTCACATACATTGTTGTGGGGGTAAATAAGTTAAATTTTCGGCACTTTTATTTCAGGAAAGAAAGACGGAAACATTGTATAGATAGATGATAAATGCCTGGTCAAGAAACTTTAATTTGATAGGAGTAGATAGATGAGGCCAGTTTTGATTTCAGGGGAATTGAGAAAAGAAGGGATAACTGTTCTTGAAGAGTTGCTGAGTGGTCTCCTGAAAGGGAGTTAGAGGCAGCCCACCTATACGTATAGTAGACATGTTATGGGAGTTATATTTCACAGAAACTACTATGTCAGTGATAGCATTGATTACTTTCTGGTTTATCAGCTGCACCTAATAGAGTTTCTTCTAATGTAGTCAGTAACCTGAAACTAGAACAGATTTGTTTTTTTAATCTACCAGGGACCTATTCTCAGTTTAAGATTAAGGCAGAGGCTAGATATTTGCCTGTCATGGTTGAAAGAGAGACTCCTTTGTATTGTTGAGAGACCATTGATCTAGACCTTAAAGTGACTGTGGATTTTACCAGGCAACTGGTTCCTCTAATTTTTATTTCTTATGTATGAAG
Seq C2 exon
AAATTGATGGACCAACCAATGTGGTCACAAATCAGGTGACAGAAGACACAGCATCTGTTTCCTGGGATCCAGTGAGGGCTGACATAGACAAGTATGTGGTGCGCTATATCGCCCCCGATGGGGAGACCAAGGAGAAGGCAGTACCAAAGGACCAGAGCAGCACCGTTCTCACAGGCCTGAAGCCAGGAGAGGCCTACAAAGTCTTTGTGTGGGCTGAGAGGGGCAACCAAGGCAGCAAGAAAGCAGACACCAAGGCCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026725-Tnn:NM_177839:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=0.473
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
NA
C2:
PF0201812=CBM_4_9=FE(40.7=100),PF0004116=fn3=PD(59.4=80.9),PF142921=SusE=PU(30.4=36.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: