RnoINT0153920 @ rn6
Intron Retention
Gene
ENSRNOG00000002548 | Tnn
Description
tenascin N [Source:RGD Symbol;Acc:1306002]
Coordinates
chr13:77872529-77881014:-
Coord C1 exon
chr13:77880925-77881014
Coord A exon
chr13:77872793-77880924
Coord C2 exon
chr13:77872529-77872792
Length
8132 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTTATTTCTTATCTGTGAAGAAA
3' ss Score
4.7
Exon sequences
Seq C1 exon
GTCTGCAGCCTGGAACGGAATATAAAATCACAGTTGTGCCCATAAGAGGAGATCTGGAGGGAAAGCCAATTCTCCTCAATGGCAGGACAG
Seq A exon
GTATGGAGGGTTTTCTTTTTTATCATCTTCACGTTTTCATATTTTTTTCTGCCTCTGTGTGACAGTTCCAGGATTTCCATGGAGAGGTGCTATGGCTCCGTGGATGGGCATCTATACTGAGGGGCAGAAGAACAGAAGCAAATCTCTCCCATTTGGCTTCTTTTCTTGTCATGGGAATACACTTTCCTGGGATCTTGGAGTCGAGGGGAGATACTATCCCCGATGCCTTTCTTCTGACTTTAGTTACTTCAATCACTGAATCGTTATTGTCTCAAGGCGCTTAATAGGCATACAGACTGCATTCCCTGGGCACAGATGAGCCAGACAATTTGTCATACTATATCTGTTCCTAATGTCCATACTCAAGCAGTCTGTTCCGAAATGGGAGATGATGTTTAGACCTTTACACGGGAGTGGGGGTATAGTTAGCATCTGTCTATTGAGAATACTATCAGATGTTGTGCAGCAATAATTTGTCGAATATCAACCAGAATGGAATATGAAACACCATAGACTTAACTGCATATTGAACTGTGCAACTTTTGCATGTAGAACAGCGCTGCTTACACAGATTGGGATCTGGAAAAGGCTGGTGACCAGAGCCTGCAAAACAGGAATCTTTAAATTTTGAGTTTTTCTCAAAGGGTAGTTTTGTTCTTTCTAGTTGAGTCTTAGAAGTAGCTACGTAGGGTGATAGAGTAATAAGGCTGAATGGTTGGAGTTAGAGAGCTGGGTAATTATAATGAAGAGCCTTAATTTAATTTATGATCCAGACAAGGTGGACTGGGTAGTCTGCCTAAGTGGTTGATGAGACATTTGAGTGAGTCAGAAAATGGCGAGGACTTCCCTTGCTTCCAAAGTCTTTCTCTCTGGCTTGATTGAGAGGTTATAGATCAATTGAAAGGTTGCTGCGTGCCAGGCAGCAAATTCCCTCAGCATTTTCATGAGTTTTGTCATTTTGTTCTCACAGTCGGTCTATGGATGAGCTATTAGTTTTATTTCTAGGTCATATGCATAAAAAAACTAAGACTTGAAAAAGTGAAGGTCAAGATCACCCAGCCAGGAAATGTTGAAGCTGGGTTTGAAAGAAGGATGCTTATCTCTAAGCCTTGATGCTTAGCCTTGGAAGCAAATTTCTTCCTAGTTGATCTTTCTGTTGAGAGATGAATATGTTTTCTCCTCTTACACAATTAACGCAACACACGACACAGTTGGTCATTAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGATTCTTTATATATCCAGCAATTCTCCATCAGACACCAACCAGGTGTCATACAAGTCAACCGACTTCTAATAATACCTACTAAAACTACTATTAGATCTGGACTGAAAGGTCAGCATTTAAAAATGGGTTCAGGAGGAGACTGGAGGACTGCCTTACTAGAATCTGAAACAATATCAACAGAGAGGCCAGTTGTAAACCTCAACAGTTGTGGGGAGGAGGTGGGTAGAGAAGAGGAAGAGAGTCTTTTTGAGTTTGGGTCTAAGAGAGCAAGTGAATTCAGCAGTGCACACTGGCAAGCTGCTGCATGGTAGAAGGGAGAGGTGCCTCAGAGGAATGGCGAGAAAGCCCATATATGCCAGATGTTGACTGGTATTAAAAAATAATTTAAATTAAGAAAGAATGAATGAACAAAAAAGGGAAAGTTTTTTTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCTTCTTCTTTTTTTTGTGTCTAAATTGAAAAACCAGGCAGGGATTTGGCAGAGGCTAATAGGTAATTGTTCTTCTCATCACCTTATGTGTTTGGCTGAATCAGCTTTCTTGTGGGTTAGACTCTTGGTCAGGAGATCTATGGGGTCCAGCAACTTAACATTTAGAGGAGAAACAATAGCATGCTTTGATCTTTCCAGCCCATAAGAATGTCAGTCTCCAACTCGAACACACAGGAAAAGAGGTGAAACTCAGCTTCCATTCTTTTGACCAGGGGAGTGTGCTATGCCTTCCCTTGGGGATTTAGGGAAGTCCTGACACCTCCGTCTTTTCATGTGTTGTTCTAAACCCCAAGGAGGTTAATTGTGAAGCTTCCCTTCCTAATGTTACCCAGGAGAAACAGGATGTGAAGTCCAAAGCATGATCAGGAGGGAAGATCCACCCTCATTGGTCTACACCACAACTAATCCTGGTAACGAAACTTCTATTTCTTGATGAAAGCCTTTTATAGTCACATTAAATGTCACAGCCTCTGAGTTCTAACTGCAATTAATTGCACGTGCCACTGAATTGGTAGTTAACCTTTCAAGTATATTTTCCCAACTAGACTATTAGCATCTGAGCAGTGTTTTTATTGTCAATTATATCCTAACATCAGGATGAGATACTTTACTGGATTTCAAATAAATCTATGGTGTGTGCACTACTAAAATAAAAAAAAAAAAGAAAAAAAGAAAAAGATAGTATAGTTTTGGAGGTCAGGCCAGACCTGTTGAGACTATGAGTTAATTTAGGAGATAAAAACTTTGTTTTCTCAAAATGTTTTGTTTCTTGCAAGATGAAAAAGAGTACTGGGATTTAAGAGCAGCATATGCATACGCAGGAAGGGAAGAATGTAGCTCAGTTATTTTCCATTTAACAAGTCAACCAGTGGAACTCGTTAAAACAAAACTCTTAAAACTGAAGGGTCTCCAAGTAAAAGAGTTTATTGAGCTGTTACAGCTGCTAGACAGAAACAAAATAAAACAAAACAAAACAAAACCCTGACCAGGTTCTTGGACAAGTTCCTTTGACTATTAGCAACAGGGCTAAATAGTAATCGAAAATATGTGAGTGGGAAGCAGAGAGCCAAGAATACACTTCTAAAATTCTGGGAAGAAAGACATATGTGCTTAATACTGAGTCTACACTGACAGTAGATAAGAGAGATTGGATTATCATGGGTAGCAGGAAATGGAATTCCACACTGATGGTTATGCAGCTAGAGGAGTTCCCCCAAGGACCTCTGCTCCTTCTGCTACAACCAGGGTCTTGAATTATGCTGCAGAAAAAAAAACATTGAGGACAAAACAATGAAGCAAACTAGGCTTTATTAAGGAAAGGATAGAGCATACTCAAGGGATAGTTATAGGCCTCTCAAGAGACACAGAATAACAAGTATTTAGCAATATCTGCAAAGGATTTTGAAGTCAGATTGGTCAAAGAACATGATCTGTATTTAAATTCAGGAATCTAAAATTGAAACATTGAATTGAATTAAAATGTACTAATATATTTATTTTTAATTCAAGAATTGTTTTATCTGTCAATGAGATTATAAGGTGTTTTATGAATGCATTATATATGTTTTATGAATGCATTATATATAGGTTTACAAATGAGCTAAGGGAGTGCTGAGGAAAAGAGTTTAAGTCAAAAAGGTCAAAGAAATTATTGCTATGCATTAGATCCAAAAAAAAAAAATCAAGACCTTTTTGATTATAAACTCTATTCACAACTTTAAAAAAAAAACCCTTAGGTTTACAGATAATGAACAATTCAGATATGATTGAAGGCCACTAACATTTTTTTCCTTAAACATGGTTCATTAGTTGTTTTAATTCTCCAGTTTTATAGCTCTCAGGAAAAGTGACACTGTCTCTCTGCAGGCAATCTTTACAACAGGGGTATGTAGTGACCACACCTTTCCCTTCTCCTACCCTCATAAGTTTTTCTGTCTTCCTGTCCTGCTTTGGGATTGTGCAGAGTTGAGAATACTTTGGAGTAGGAGAGCAGTGTTTGTCGCTCTAAATTAGTCAGTGTTAATACTTGTGAAAGCTTTCAAGTAGGGTGTGATGGCTCTGGTCAGTGTCCATATTTAAGTCAAGGTTTCTATGTAGCATTCAAGTCTAGGGAGAGATCATACTATTAGTTTCACCCACACTTCCTTTATCATCTTCCTCCCTCTTCCTCTCAAGTCATCCTTTTATCAAACTAATATCTTGAAAAGGACAAGACTGATAGAGGTCTGTGAGGACTGCCAGTGTGTGGCAGGTGCGAAGTTGTAGCAGAAGGAGGGCACTGGGACTAGGTTGGAGAGATCCTGTTTTGTAGATGAGGCTACAGCTGTAATTCATCTACGATTTGGCCCACCATCGCAGCTACTGGAAGATTTTGTTGCATGGAAAAACGACTTAATGTTCCCCACATCCCCTCTTGGCAGACAGGGAGGTTTTGGTTTTGTAGTGCTGGCTTCATGCAATTTTGTGAGTGTGTGGGGTCCACCCATGGGGTCTACTTCTCATTCCCGATGTCAATATTTGATTGCTATCTTTTTTCCACCCCGTGAATGATCAGGGATCACAACTCTGTGAGGACCCCCCTTCTAGTTTATGCTACTAAGGAGCTGAGAGAAAGGGGTGGGGTGGGGAACATTAAGTCGTTTTTCCATGCAATCATAGAGTTCTAGGCTCCTCTGTCTCTAACTGGACTTCTGTGGTTAAGCTTCTAGATCTAGAACTGTTATAGATATAGAACTGGATTGATTTTTTCTTTTTTGTTCTCATAACCAAGACGGATTTATTTATTTAGGCTTTAGGCTCTACTGTTCCCTAACCAAGGTCTGGAAACTTAACCCACAGAAAACCCAATGTTAAGAAGATGGATACTACAGTGAAAGAAATGTTTTATTCAGTGACTGAAGGACGAGGAAGTGGGAGATTTTACTTGAAAATCACCCAGGAGGCTAGGTAATTGAAGAGTTACAGACATAGGGCCAGAGCAGTGAGAGAGACCCCCTCCAACAAAGAAGAGAGGTGCTACTGTCTTTTCTCTGAACAAGCAGAGCGCTTTCAGAAACTCAGATGCCTCCTCTTTTCATGGTCTCTTGTTTTCATGTGACATCTGATAGTTCTTTTTAAAACCCTGAATGAGAAAGAAAGACTTAGCAAGGTCTAGGTCAAGTTGATCTTGCATTATAACTTCAGGCAAAGCATTTCTCAAATGATCAACATATCTATATGCAAAGTGGAGTAGAATTTGACCCAAAGGTTAAAGCAAAAAAAAAAAAAAAAAAAAGGACAGGCATAGAATGAAGAAGGCAGAGATAGCATGACTTCTCATCCCATTTCAGTCAGTCATCAAACATAAAACATAAGCACGTAAAAGCAGAGAGTCAGTGTTCCCAGCAAAATGTTCCTCAAATCCTTCAAACACAACCTAGGAAACGGTTAGTATAACAACAATGCACTGGGTGTTTTCTACAGCAAAGCTAAGGGAAAACTAGTGTCTTTAGCTTGATTTTGTGACCTACAAAGTTAGTGTAGTTTTAAATGAATGGCAAATGATACTAGAGGTTTGCTTAGGGTTTTCCTTGACAACTACTCCATCTCTTCAAGTTCTGAGACTGCTGAGGGAACACAAACTCCAGGGCTGGCCAGATTGGATCTCTCAGTGCACACATACAATTCTGACCCTATTAATCCATTGGCCTGTGCAGAGTGCCAGATGCTACAGGCTATGTACTGACTGGGGCAAGGTGCTGGAGCGAGAGGCGTCGCTAGGATGCTGGACTTGTAGATGTGGGTGGGTCACTTTGGAGAGGGTGAGAGTCAGGACCTTCAAGAGCAGGACTGCATTCCTCTCCGTGTGTCCTAAATCTTCTCTTCTCCTTTCATCACTATTGTTCGGACTGACCTATGGCCTTGGGAGGTGTCAGCGTCCCTCCCTAGCAAGCACAGAGACATTTTTTTTCATACAGAAAGGGGCAAGGGGTCAGAGAGGGCGTCCTCTCTGTTGTGTGCATGTGCTCTTCTGAACAATCTCTTAGAGCTTTCTGAAGGTGGCATTGGGCTTCTGCAGCCTTCTGCATCCATTCCACAGAGCTCCCTTTGCCTGTGAGATATGTCTAGCACTCCCAAGGCTGCTTTCTCTCCTTAGTATTCTCCCCAAGTTCTAGTCTACTACTGCGCTGTTATTTCAGGTTAACAGTAGCCTTTCTGAGCATATTTTATTTCACCCACAATTGTTGGTGGTTATTCCACATGGGTTGAGGAGATGCCAGTCATATTGGATTGGATCCACCCAAATGACTCTCCGTTTTCACTTTATTATCTCTGAAAAGATGTCCTGAGGTGCAAGGCACAACACTTTGGCACGTTGTATTGGAGCAGGAGAACTGGCCACAATTTAACATACGCTGCTACTGATCGTCAGCTGCAAGAAGACAAAGATTATTAGTGGAGTGGCAGTCGCTAATATTTATTACTGTTGATCTTAACACAAGTTATCTAACCTGCCTGGGCCCAGCATATACTTATTGTTCTAAGAGAGGAAGACTTTATTAGTTTTCCTAACTTCTGAGGCACCTGCTAAATGCCTTGTGTTTTTACCATGGGATTTGATAACTAATGTATGAAAAGCGCCATGACCCTGGGTGTGTGCTTGGTAAATGGCAGTTGACTTACTAAATGAAATATGAGCTACCTCTGGTCATGGAACACATTTCATCTTTTCTTGCAAATAAAACACTGCCCTTACGTTTGATAAAGGTGCACTGGAGCTAAGGTTGAAAAATGGGACTGTGTGAAATTGTAACTTCTCTCTGAAAAAAATGCCTGGCTGAGAGACCAAGAGTAGAGTGGGCAGAGGGAGGAGAAGAGTTTAGCTGCCTTAGAGCCAATAAGTTGTTCTGTGGCTTTTCAGTTAAAAAGATGTGGATCTATATACAGAGGACATTCTAGGGTTCTGTTAGCCATCTTTATCAGTGGCCTTGGCGAGCGTGTATTGATGGCTTGCTTATAAAATTCTCCAGTGTCAGGAAGATGGACGGAAAAGTGAGCATATTAGACAAAAGACTAAATTATAGATGGAACTTTAAGAAGGTAAAACCAATAAGTATAAATGTTGGCAAGGGCATTATTAAACATGCATAAAATAGAGATGATTGGACTTAACATGACCCTCCTCATCCTTTGATATATATCAGAATCACTTAAAGTTTTGCTTATGTGTTTACTAAATTATTATATATTTTTAGGTAAGGCTTGGCTCAGTGGTTCACTCTGGTGTTGAACTTCATGTACAGCCCAGGTTTATCTTGAACTCATGATCCTTCTGCTTCAGGCTTCTAAGTGCAGGAATTATAGGCATGTCCTACTACAACCAGGGAGGTATGTGGATGTGTGGTGATACTTGCTTCTAATCCCAGCATTCAGAAAGGTGAGATACAACGAATGTGAGTTCAAGCCAGGCTGGGCTATATAGTAAGATTCTCTTTAAAAAAAAAAAAGCATAAAACAAAACCAACAAATCAAATAAACAAACAAGAGTCCCTGAGAGAAGCTAAGAGACGCTAGGGCTTACTCTACTCTTCCTGAAGTGGAATCTCTGCGGGTTCAGTATTGGCAGAGCTTGAGGACCTCTGGGTAAGGGGCTTGCTGAGGCCACAGGTACTGGGTGTGGTGTTGAGAAGCATGTGTGTGTCTAGGATATCGTTGGCAAATTGTTCTGAACATCAACGACCGCAACAGAGACTCCTGGCTGTTTTATTTATTGATAACCATTGAATGGCATCCTATTCCCTGTCACAAATGTTGTTGGGGATGTAAATAAGTTACGTTTTGGCACCTTTATTTTGGGAAAGAAAGAAGAAAGAAACAATGTATAGATAGATGATGAATGCTGGGTCAAGAAACTTTAATTTGTAAGGAATAGACAGCAAGGTCAGTTGTTTTGATATCAGAGGAATTGAGAAGAGAAAGGATGATTGTTCTTGAATAGTGGCTGAGTTCTCTCCTGAAAGGGACTTAGAGGCATCCCGCCTGCACTAGTAGGGACCCATTAAAGGAATAATATTTCACAGAAACTACTGTCCATGATAGCACTGATTACTTCTTAGTTTGCTTATCAGCTGCACCTAATGGAGTTTCCTCTAATGTAGTCAGTGATCTGAAACTAGAATAGATTTGTTATTAATCTACCAGGATTAGTTTAAGGCTAGGGTAGAGACTAGATATTCACCTGTCATGGTTGAAGGAGAGATCCTTGACCTAGACTTTAAAGTGACTGTGGATTTTACCAGGCAACTGGTTTCTCTAATTTTTATTTCTTATCTGTGAAG
Seq C2 exon
AAATTGATGGACCAACCAATGTGGTCACAAACCAAGTGACAGAAGACACAGCATCTGTTTCCTGGGATCCAGTGAGGGCTGACATAGACAAGTATGTGGTGCGCTATATCTCCCATGATGGGGAGACCAAGGAGAAGGCAGTACCCAAGGACCAGAGCAGCACCGTTCTCACGGGCCTGAAGCCAGGAGAGGCCTACAAAGTCTTTGTGTGGGCTGAGAGAGGCAACCAAGGCAGCAAGAAAGCAGACACCAAGGCCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002548:ENSRNOT00000003452:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=0.479
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
NA
C2:
PF0004116=fn3=WD(100=88.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]