HsaINT0171528 @ hg19
Intron Retention
Gene
ENSG00000197253 | TPSB2
Description
tryptase beta 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:14120]
Coordinates
chr16:1278336-1279063:-
Coord C1 exon
chr16:1278900-1279063
Coord A exon
chr16:1278815-1278899
Coord C2 exon
chr16:1278336-1278814
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTGACCTCTGACCTTCCCAGGGC
3' ss Score
8.83
Exon sequences
Seq C1 exon
AGCGCCTCCCACCGCCATTTCCTCTGAAGCAGGTGAAGGTCCCCATAATGGAAAACCACATTTGTGACGCAAAATACCACCTTGGCGCCTACACGGGAGACGACGTCCGCATCGTCCGTGACGACATGCTGTGTGCCGGGAACACCCGGAGGGACTCATGCCAG
Seq A exon
GTGGGCCCCGCCTGTCCCCCGCCCCCCGCCCCCCAACCCCCACTCCCAGGCCTGTTCGGCGAGCGCTGACCTCTGACCTTCCCAG
Seq C2 exon
GGCGACTCCGGAGGGCCCCTGGTGTGCAAGGTGAATGGCACCTGGCTGCAGGCGGGCGTGGTCAGCTGGGGCGAGGGCTGTGCCCAGCCCAACCGGCCTGGCATCTACACCCGTGTCACCTACTACTTGGACTGGATCCACCACTATGTCCCCAAAAAGCCGTGAGTCAGGCCTGGGGTGTCCACCTGGGTCACTGGAGAGCCAGCCCCTCCTGTTCAAAACACCACTGCTTCCTACCCAGGTGGCGACTGCCCCCCACACCTTCCCTGCCCCGTCCTGAGTGCCCCTTCCTGTCCTAAGCCCCCTGCTCTCTTCTGAGCCCCTTCCCCTGTCCTGAGGACCCTTCCCCATCCTGAGCCCCCTTCCCTGTCCTAAGCCTGACGCCTGCACCGGGCCCTCCGGCCCTCCCCTGCCCAGGCAGCTGGTGGTGGGCGCTAATCCTCCTGAGTGCTGGACCTCATTAAAGTGCATGGAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197253-TPSB2:NM_024164:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=0.382
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.1=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGTGAAGGTCCCCATAA
R:
CATTCACCTTGCACACCAGGG
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)