MmuINT0164373 @ mm9
Intron Retention
Gene
ENSMUSG00000033825 | Tpsb2
Description
tryptase beta 2 [Source:MGI Symbol;Acc:MGI:96942]
Coordinates
chr17:25504390-25505037:+
Coord C1 exon
chr17:25504390-25504553
Coord A exon
chr17:25504554-25504626
Coord C2 exon
chr17:25504627-25505037
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTGACCCCTGTCTTCTTCAGGGC
3' ss Score
11.43
Exon sequences
Seq C1 exon
AGCCTCTCCCACCTCCTTATCCTCTGAAGCAAGTGAAGGTTCCCATTGTGGAAAACAGCCTGTGTGACCGGAAGTACCACACTGGCCTCTACACGGGAGATGATTTTCCCATTGTCCATGATGGCATGCTGTGTGCTGGAAATACCAGGAGAGACTCCTGCCAG
Seq A exon
GTAGGTCCTGTGTCCTCCCTGCACCACACCCCATCTGGTCTCCATACTGTGTGCTGACCCCTGTCTTCTTCAG
Seq C2 exon
GGCGATTCAGGGGGGCCACTGGTCTGCAAAGTGAAGGGTACCTGGCTGCAGGCAGGAGTGGTCAGCTGGGGTGAGGGCTGCGCACAGCCCAACAAGCCTGGCATCTACACCCGGGTGACATACTACTTAGACTGGATCCACCGCTATGTCCCTGAGCATTCCTGAGACCCATCCAGGGTCAGGCAAGAACCAGGGCTGTGCTGTCTTTAACTCACTGCTTCCTGGTCAGGTGGAACCCTTGCCTTCCTTGTCCTCTGTCTCCCCTGTCTACTAGGTGTCCCTCTGAGCCCCCCACCCCCCCAGTTCCGTCTTGAGTCCCTAGCCATTCCGGTTCCCTCTTGCCTCCCACCACATAATAGTTGCATTGTGTGGCTCCCTCTCTTCTGTGGCTCATTAAAGTACTTGAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033825-Tpsb2:NM_010781:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGTGCTGGAAATACCA
R:
AGCGGTGGATCCAGTCTAAGT
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: