HsaINT0171530 @ hg19
Intron Retention
Gene
ENSG00000095917 | TPSD1
Description
tryptase delta 1 [Source:HGNC Symbol;Acc:14118]
Coordinates
chr16:1306517-1307063:+
Coord C1 exon
chr16:1306517-1306688
Coord A exon
chr16:1306689-1306797
Coord C2 exon
chr16:1306798-1307063
Length
109 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TGGGATCCTCCGCTGCCCAGGGA
3' ss Score
4.4
Exon sequences
Seq C1 exon
CCCCAGGCCAGGCCCTGCAGCAAACGGGCATTGTTGGGGGGCAGGAGGCCCCCAGGAGCAAGTGGCCCTGGCAGGTGAGCCTGAGAGTCCGCGGCCCATACTGGATGCACTTCTGCGGGGGCTCCCTCATCCACCCCCAGTGGGTGCTAACCGCGGCGCACTGCGTGGAACC
Seq A exon
GTGAGTCTCCTGGGGCCTGGAGGGGTGGGCAAGGGCTGGATGTGAGCCCTGGCTCCCGGGTGCTCCTGGGGGCTGCCCAGGGCCCTGAGTGGGATCCTCCGCTGCCCAG
Seq C2 exon
GGACATCAAGGATCTGGCCGCCCTCAGGGTGCAACTGCGGGAGCAGCACCTCTACTACCAGGACCAGCTGCTGCCGGTCAGCAGGATCATCGTGCACCCACAGTTCTACATCATCCAGACCGGGGCGGACATCGCCCTGCTGGAGCTGGAGGAGCCCGTGAACATCTCCAGCCACATCCACACGGTCACGCTGCCCCCTGCCTCGGAGACCTTCCCCCCGGGGATGCCGTGCTGGGTCACTGGCTGGGGCGACGTGGACAATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095917-TPSD1:NM_012217:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(23.0=81.0)
A:
NA
C2:
PF0008921=Trypsin=FE(43.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCATACTGGATGCACTTC
R:
ATGTGGCTGGAGATGTTCACG
Band lengths:
257-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)