GgaINT1018295 @ galGal4
Intron Retention
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2481570-2481886:+
Coord C1 exon
chr12:2481570-2481672
Coord A exon
chr12:2481673-2481749
Coord C2 exon
chr12:2481750-2481886
Length
77 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CGGTGGCTCCCGGCCGGCAGGAT
3' ss Score
5.53
Exon sequences
Seq C1 exon
AGTGCTACCACGGCCACGGTGAGCGGTACCACGGCCACGTCAGTAAGACGCGCAAGGGCATCACGTGCCAGAGGTGGGACGCCACGACACCCCACGTGCCACA
Seq A exon
GTGAGTGTGCCACGAGCGTGCCAGGGTGAAGCACAGCAATGGGGGTGGGGGCAGTAACGGTGGCTCCCGGCCGGCAG
Seq C2 exon
GATCTCGCCCACCACCCACCCCGAGGCACACCTGGAGAAGAACTACTGCCGCAACCCCGACAACGACAGCCACGGCCCCTGGTGCTACACCATGGATCCACGCACACCCTTTGACTACTGTGCCATCAAGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(41.8=94.3)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGTGCCAGAGGTGGG
R:
GGCACAGTAGTCAAAGGGTGT
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]