RnoINT0094894 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116860267-116860624:+
Coord C1 exon
chr8:116860267-116860369
Coord A exon
chr8:116860370-116860487
Coord C2 exon
chr8:116860488-116860624
Length
118 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCTCCCGCCCGTATATCTAGATT
3' ss Score
6.72
Exon sequences
Seq C1 exon
GCTGCTACCATGGCTCAGGTGAACAGTATCGTGGCTCAGTCAGCAAGACACGCAAGGGCGTTCAGTGCCAGCACTGGTCCTCAGAGACACCACATAAGCCACA
Seq A exon
GTGAGTGTGTGCACATAGCCAGATTGGGCCCTAACTCTTGGGCAGAATGCTTTAAGTTATTGTGAGCCTAAAGAAGGTCTGACTGTGTGTTCCCCCTACCTCCCGCCCGTATATCTAG
Seq C2 exon
ATTCACACCCACCTCAGCACCACATGCAGGCTTGGAGGCAAACTTTTGCCGGAATCCGGATGGAGATAGCCATGGGCCCTGGTGTTATACTTTGGACCCAGAGACCCTGTTTGACTACTGTGCCCTAAAACGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.191
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(41.8=94.3)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCATGGCTCAGGTGAAC
R:
CACAGCGTTTTAGGGCACAGT
Band lengths:
237-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]