MmuINT0101354 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108083029-108083390:+
Coord C1 exon
chr9:108083029-108083131
Coord A exon
chr9:108083132-108083253
Coord C2 exon
chr9:108083254-108083390
Length
122 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCTCCTGCCCCTACATCTAGATT
3' ss Score
8.54
Exon sequences
Seq C1 exon
GATGCTACCACGGCTCAGGTGAACAGTATCGTGGCTCAGTCAGCAAGACGCGCAAGGGCGTTCAGTGCCAGCACTGGTCCTCTGAGACACCGCACAAGCCACA
Seq A exon
GTGAGTGTGTGCTATGTGCAGATAGGGCCTTAACTCTAGGGCAGAATACCTTAAGTTCTTGTGAGCCTAAAGAGGGTCTAAGTGGCCTGATGTGTCCCCCTACCTCCTGCCCCTACATCTAG
Seq C2 exon
ATTTACACCCACCTCGGCACCGCAGGCGGGACTGGAGGCCAACTTCTGCAGGAATCCTGATGGGGATAGCCATGGGCCCTGGTGCTATACCTTGGACCCGGATATCCTGTTTGACTACTGTGCCCTACAGCGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.213
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(41.8=94.3)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTACCACGGCTCAGGT
R:
GGGCACAGTAGTCAAACAGGA
Band lengths:
228-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types