BtaINT0095636 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51083656-51084042:+
Coord C1 exon
chr22:51083656-51083758
Coord A exon
chr22:51083759-51083905
Coord C2 exon
chr22:51083906-51084042
Length
147 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
3' ss Seq
TGCTCCCCTCTTCGGCCTAGGTT
3' ss Score
7.56
Exon sequences
Seq C1 exon
ACTGCTACCATGGCGCGGGGGAACTGTACCGCGGCTCTGTTAGCAAGACCCGAAAGGGCATCCGGTGTCAGAACTGGTCGGCTGAGACGCCACATAAGCCGCA
Seq A exon
GTAAGCTTGTCCGCGCACCTGGCACCTCCCAGACCCAGGCCACAGGCCCCGCCCCGGACAACGCCTAGGGTGCCAAGCCTAGGCATCTTGGTCAGTGCTTGGAGTGCTTGGGGTTACCCTTTGATCTTGCTCCCCTCTTCGGCCTAG
Seq C2 exon
GTTCAAGCACACTTCTGCCCCGCACACGCCCCTGGAGGAAAACTTCTGCCGGAACCCAGACGGGGATAGTCACGGGCCCTGGTGCTACACCACGGACCCAGGGACTCCATTCGACTACTGTGCGCTGCGGCGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.255
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(41.8=94.3)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTACCATGGCGCGG
R:
GCGCACAGTAGTCGAATGGAG
Band lengths:
228-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]