HsaINT0171537 @ hg19
Intron Retention
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:14134]
Coordinates
chr16:1271651-1272341:-
Coord C1 exon
chr16:1272196-1272341
Coord A exon
chr16:1272097-1272195
Coord C2 exon
chr16:1271651-1272096
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCGCCTTCTCTGTCCTCAGGAC
3' ss Score
12.37
Exon sequences
Seq C1 exon
AGCCTCTGCCACCCCCGTACAGCCTGCGGGAGGTGAAAGTCTCCGTGGTGGACACAGAGACCTGCCGCCGGGACTATCCCGGCCCCGGGGGCAGCATCCTTCAGCCCGACATGCTGTGTGCCCGGGGCCCCGGGGATGCCTGCCAG
Seq A exon
GTGAGCCTGCCAGGCCGTGACAGAGGATGGGGGCGGCTGAAGCCCAGGGAGGGGCTCCCCATCTTCTCGGCTCCCAATGCTCGCCTTCTCTGTCCTCAG
Seq C2 exon
GACGACTCCGGGGGGCCTCTGGTCTGCCAGGTGAACGGTGCCTGGGTGCAGGCTGGCACTGTGAGCTGGGGTGAGGGCTGCGGCCGCCCCAACAGGCCGGGAGTCTACACTCGTGTCCCTGCCTACGTGAACTGGATCCGCCGCCACATCACAGCATCAGGGGGCTCAGAGTCTGGGTACCCCAGGCTCCCCCTCCTGGCTGGCTTCTTCCTCCCCGGCCTCTTCCTTCTGCTAGTCTCCTGTGTCCTGCTGGCCAAGTGCCTGCTGCACCCATCTGCGGATGGTACTCCCTTCCCCGCCCCTGACTGATGGCAGGAATCCAAGTGCATTTCTTAAATAAGTTACTATTTATTCCGCTCCGCCCCCTCCCTCTCCCTTGAGAAGCTGAGTCTTCTGCATCAGATTATTGCAACATTTAACCTGAATTTAAAAGCACACGAAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176-TPSG1:NM_012467:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=43.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTTCAGCCCGACATGC
R:
TAGGCAGGGACACGAGTGTAG
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)