MmuINT0164377 @ mm10
Intron Retention
Gene
ENSMUSG00000033200 | Tpsg1
Description
tryptase gamma 1 [Source:MGI Symbol;Acc:MGI:1349391]
Coordinates
chr17:25373725-25374442:+
Coord C1 exon
chr17:25373725-25373870
Coord A exon
chr17:25373871-25373957
Coord C2 exon
chr17:25373958-25374442
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTGCCCTTCTGTCCTGCAGGAT
3' ss Score
12.09
Exon sequences
Seq C1 exon
AGCCTCTGAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGGATGTAAAGACCTGCAGCCAGGCTTACAATAGTCCCAATGGCAGCCTCATCCAGCCAGACATGCTATGCGCCCGGGGCCCTGGGGATGCCTGCCAG
Seq A exon
GTGAGTGGGCTGGGAATGTGGAGGAACGGCGCACCATGGAGCACGGTCCTTAGAATCCCATCCTTGTTTTGCCCTTCTGTCCTGCAG
Seq C2 exon
GATGACTCTGGAGGGCCACTAGTCTGCCAGGTGGCTGGAACCTGGCAGCAGGCCGGCGTTGTCAGCTGGGGTGAGGGCTGTGGCCGCCCTGACCGCCCTGGCGTCTATGCCCGGGTTACTGCCTATGTAAACTGGATCCACCACCACATCCCAGAAGCAGGGGGCTCAGGAATGCAAGGGCTTCCCTGGGCTCCTCTCCTGGCTGCCCTCTTCTGGCCAAGCCTCTTCCTGCTGCTGGTCTCTGGAGTCCTGATGGCCAAGTACTGGCTGAGCTCTCCCTCCCACGCGGCCTCGGAACTCTGAATGAGGTGTAGCAACCAACCCAAGTGTCTTTCTTAAATAAGTTAGTGTTTATTCAGCTTTGCTTTGCCCCTCCCCTCCCCTTAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCAACATTTAACCTGAATTTGTAGAACGGATGACATAAAGCAAATGGATGTCAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033200:ENSMUST00000024999:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGCCCCCATACAACCT
R:
CAGACTAGTGGCCCTCCAGAG
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types