BtaINT0118814 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016973 | PRSS8
Description
protease, serine, 8 [Source:HGNC Symbol;Acc:HGNC:9491]
Coordinates
chr25:27485086-27486567:-
Coord C1 exon
chr25:27486401-27486567
Coord A exon
chr25:27486269-27486400
Coord C2 exon
chr25:27485086-27486268
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTGTGTGATTTTCTTCTCAGGGT
3' ss Score
9.68
Exon sequences
Seq C1 exon
TGAGCCTCCAGCACCCCCGGCCACTGCAGCAACTTGAGGTACCACTGATCAGTCGTGAGACCTGTAACTGCCTGTACAATATCAATGCCAAGCCCGGGGAGCCCCACGTAATCGACCAGGATATGCTGTGTGCTGGCTACGTGAACGGGAGCAAGGACGCCTGCCAG
Seq A exon
GTAAATGCAGGGGGTCTGGGTGAGTGGGGGAGACGGGTGTGTCTTGGGAGATGAGGGCTTGAGAGGGCTTGGCCTGGATGGTTGGAGGCCTGGGGTCCTGTCCTGACAGCTGTTGTGTGATTTTCTTCTCAG
Seq C2 exon
GGTGACTCTGGGGGCCCACTTTCCTGCCCAGTGGCAGGCCGCTGGTACCTGGCAGGCATCGTAAGCTGGGGTGATGCCTGTGGGGCCCCTAACAGGCCCGGTGTTTATACCCTGACCTCTGTTTATGCCTCCTGGATTCACTACAAAGTGGCGGAGCTCCAGCCTAAGGTGGTGCCCCAAATGGAGGAGTCCCAGCCCGATGGCCACCTCTGCAGCCACTACAAGGGTTTCAACTCTGCCCCAGCACAGGGCTTGGTGGGACCCATCCTTCTGCTGCCACTTGGCCTGACCCTGGGCCTCCTCCGCCCACTGCACGAGGACTGAGCTACTCACTCCTGGGAGCTGCTTTGCTTCTGAGACCTCCACATCACACCCGAGGACGGATGCTGTTCCCGTGTTAGGCCCCACCCGGGACACTCTGGGCCCAGGGCCTGACTTGAGTCACTGCCTCCTCCCAGGACCCTGTGGGAGTTCAAGGCACCATCCTGAACTCTGAGCTCACTCTTCTGGATTGTTCTTTGGGACGGTAACCTCCACTCCAGGAGTTTATTGCCTGTGGTACTGGCTAGAACCTCTGGTCACTTCCATCTGCTGTCCACAAGCCTATCTGCTGGGCTCCTATGGAGCCCCCAAGGACCCTCTGCTATGAAAATGGGCCCTGGCTCCCTATCCATTTCTAGAAGACTGGCCAGCTGATGGCTACTGAAGAAGGACTGGCTCAGCACCTCACCTGCTCTGTCTGATGAGCCCCGTCACTTCACCTTCTTCCTGTCTTCTGGGCCAGGGCTGCCTCTGAAGTGTGTAAGTCACTTAGTCATGTCCGACTCTTTGCAGCCCCATGGACTGTAGCCCGTCAGGTTCCTCTGTCCATGGGATTCCCCAGGCAAGAACACGGGAGTGAGTGGCCATTTCCCTTCTCCAGGGGATCTTCCTGACCCAGGAATCAACCCTGATCTCCTGCATTGCAGGTGGATTCTTTACCATCTGAGCCACCAGGGAAGCCTGGGGCTGCCTCTGGACAGCAGGTTTTCAAGGATAAAAAAGGCCCAAGTCTTGCCTCATTGGCTGCCATGCCCCCCTTGAGCCCTGACTCCTGGACTCCGGAGGACTGAGCCCCCACCGGAACTGGGCTCCAACATGCATCTGGGGTGGGGGGTCAGAAGGAGTAAAATGTTCTGAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016973:ENSBTAT00000037413:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAACTTGAGGTACCACT
R:
GTCAGGGTATAAACACCGGGC
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]