MmuINT0127566 @ mm9
Intron Retention
Gene
ENSMUSG00000030800 | Prss8
Description
protease, serine, 8 (prostasin) [Source:MGI Symbol;Acc:MGI:1923810]
Coordinates
chr7:135069231-135070425:-
Coord C1 exon
chr7:135070259-135070425
Coord A exon
chr7:135070155-135070258
Coord C2 exon
chr7:135069231-135070154
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ACAGCTTTTTTTCTCCTTAGGGT
3' ss Score
10.94
Exon sequences
Seq C1 exon
TGAGCCTCCAGACCCCTAGGCCTCTGCAGCAGCTCGAGGTACCACTCATCAGCCGGGAAACCTGTAGCTGCCTGTACAACATTAATGCGGTGCCTGAAGAACCGCACACTATCCAGCAGGACATGCTGTGTGCTGGCTATGTGAAGGGAGGCAAGGATGCCTGCCAG
Seq A exon
GTAACAGAGGGGACAAGTGCACCCTGAGAGCTGGAGGGCTGAGTGGAGCTGGCATGGGTGACTATTGGCCTGAGGTCTGTCCTGACAGCTTTTTTTCTCCTTAG
Seq C2 exon
GGTGACTCTGGGGGCCCACTCTCTTGTCCCATGGAGGGCATCTGGTACTTGGCAGGCATTGTGAGTTGGGGTGATGCCTGTGGTGCCCCCAACAGGCCTGGAGTATACACTCTGACTTCTACCTATGCTTCCTGGATCCACCACCATGTGGCAGAGCTCCAGCCTCGAGTTGTCCCCCAGACTCAGGAGTCCCAGCCGGATGGCCACCTCTGCAACCATCATCCTGTCTTCAGCTCAGCGGCAGCCCCGAAATTGTTAAGGCCCGTACTTTTCCTGCCACTTGGTCTGACCCTGGGCCTCTTGTCTTTGGCTTGAACATTAAGCTATTTAACCCTCAAAGTTGACCATGCTTCCAGGACCACAGCACACCCAAGGACATGTGCCTGTCCGGGAGGGCAGCATGCCGACTTGATCTTTGAGCCCACTCGTCTGCATTTGTTCTTTGGGATTATATAATCTAGGGCCAAGAAGTTTACTGCCTGTGGAGCGGGCAGGAACTCTAGCCACCTTTCTCTGTTACCTGCAGCTGATTGGCAAGGCTCCTATGGAGCTCCCAGAAGCCTCAGCTAGGAAAATGAGCCCTCACTTCAGCCTGTATCTAGCACGTGGGGCAGCTGCCTAGCTGACTGCTGCACAAGGCTGACTCTGGGCTCTACCCACCCTGCCTGATGAGCCCTTCACTTTGTCCTCTTCCTGCCTCCTGGGCTCTGCCTTAATCTCCTGGACTCCGGAGGACTGAGCCCCCACCGGAGCTGGCTGGGGCTTGGGTCAGGGTGAGGAATAAAAGGAGCGAGGAATCAATGTTTTTAACACAGCTGGCTGTCTGTGAGATGAAATGAAGAATACCACCCTTTGGCATCTCTGCGTACCTCCAAAGTCCAGTGCACCAGCAGATTTTACTTTATGAATAAATGACACAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030800-Prss8:NM_133351:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGTGAAGGGAGGCAAGG
R:
GGATGATGGTTGCAGAGGTGG
Band lengths:
256-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: