RnoINT0118839 @ rn6
Intron Retention
Gene
ENSRNOG00000019616 | Prss8
Description
serine protease 8 [Source:RGD Symbol;Acc:619973]
Coordinates
chr1:199372519-199374069:-
Coord C1 exon
chr1:199373903-199374069
Coord A exon
chr1:199373799-199373902
Coord C2 exon
chr1:199372519-199373798
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GAGCTCTTTTTTTTCCATAGGGT
3' ss Score
9.97
Exon sequences
Seq C1 exon
TGAGCCTCCAGACCCCTAGGCCTCTGCAGCAGCTTGAGGTACCACTCATCAGCCGTGAAACCTGTAGCTGCCTGTACAACATTAATGCAGTGCCTGAAGAACCCCACACTATCCAGCAGGACATGCTGTGCGCTGGCTATGTTAAGGGAGGCAAGGATGCTTGCCAG
Seq A exon
GTAACAGAGACAAGTGTGCCCCGAGAGGTGGAGGGTTGAGTGGCGCTGGCATGGATGGTTGTTAGCCAGAGGTCTGTCCTGATAGAGCTCTTTTTTTTCCATAG
Seq C2 exon
GGTGACTCTGGAGGCCCACTCTCTTGTCCCATAGACGGCCTCTGGTATTTGGCAGGCATTGTGAGTTGGGGTGATGCGTGTGGCGCCCCCAACCGGCCTGGAGTATATACTCTGACTTCTACCTACGCTTCCTGGATCCACCACCACGTGGCAGAGCTCCAGCCTCGCGCGGTTCCCCAGACTCAGGAGTCCCAGCCGGACGGCCACCTCTGCAACCATCATCCTGTCTTCAACTTAGCCGCAGCCCAGAAATTGTCAAGGCCCATACTTTTCCTGCCACTGAGTCTGACCCTGGGCCTCTTCTCCCTTTGGCTTGAACATTAAGCTACTTAATCCTCAAAGTTGACCATGCTTCCACGACCACAGCACGCCCAAGGACATGTGCCTGTTCAGGGGGTCAGCACGCCGACTTGATCTTTGAGCCCACTCTTCTGCATTTGCTCCTTGGGATTATAATTTAATCTAGGGCCAAGAAGTTTACAGCCTGTGGAATGGACCAGGACTCTAGCCACCTTTCTCTATTATCTGCAGTTTATTGGTTAGGCTCCTATGGAGCTCCCAGAAGCCTCACTTCAACCTGTATTTAGCACACAGCAGCTGCCTAGCTGACTGCTGCAGAAGGCTGGCTTCAGGGCCGACCCACCCTGCCTGATGAGCCCTTCACTTCGTCCTCTTCCTGCCTCCAGGGCTTTGCCTGTCTTTCTGACAGGGAAGACAGCAGCCTTAATCTCCTGGACTCCGGAGGACTGAGCCCCCACCGGAGCTGGCTGGGGCTGGGGTCAGGGTGAGGAGTAAAAGGAGGAAGGAGGAAATGTTTTTAACACAACTGGCTGGATGTGAAATGAAATGAAGAATATCACCCTTCAGCACTTCTTCCTGCCTCCGAAGTCCAGCACACCAGCAGAATTTGCTTTATTAATAAATGACACAAAACAGGTCTGTACACATATTTACAGGTTAGAGGCCAGGAAACACAGATCCAAAGAAGGGCACAGGCCATTCACTTCTTGGAGAGCTTGACTTGTTTGTGCTTCGGGGGTGCCCACTTGAGGCAGACAGAGTCCACTGTGGGAGGAAAGAGGAATGAGAGGTCAGCAGGACCTCTGGGCCAAGTCTGCTTACACCTGGCTGCCCCTCTGGGCCCAGGCCAGGTTTCACCTTCACGGGATGAGAACAAAAGGGAGCTTTGGACCTGGGGGGAGGGGATCCCAGGAATGAGTAACCACCTCTAGGCTGCTGTCCTAGAAACTGGTTCAACTGGTTTGGATCTTGAGGAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019616:ENSRNOT00000026572:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGCAGCTTGAGGTAC
R:
ATATACTCCAGGCCGGTTGGG
Band lengths:
254-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]