HsaINT0133046 @ hg38
Intron Retention
Gene
ENSG00000052344 | PRSS8
Description
protease, serine 8 [Source:HGNC Symbol;Acc:HGNC:9491]
Coordinates
chr16:31131433-31132595:-
Coord C1 exon
chr16:31132429-31132595
Coord A exon
chr16:31132336-31132428
Coord C2 exon
chr16:31131433-31132335
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGTGTGGCTTCTCTCCTCAGGGT
3' ss Score
11.4
Exon sequences
Seq C1 exon
TGAGCCTCCTGACGCCCAAGCCACTGCAGCAACTCGAGGTGCCTCTGATCAGTCGTGAGACGTGTAACTGCCTGTACAACATCGACGCCAAGCCTGAGGAGCCGCACTTTGTCCAAGAGGACATGGTGTGTGCTGGCTATGTGGAGGGGGGCAAGGACGCCTGCCAG
Seq A exon
GTAAGCACAGGCCCGGGGGGCAGATGACCAGTGCAACTTCGGAAAGGAGGCCTGGCCCGGTCCTGATGGCTGCTGTGTGGCTTCTCTCCTCAG
Seq C2 exon
GGTGACTCTGGGGGCCCACTCTCCTGCCCTGTGGAGGGTCTCTGGTACCTGACGGGCATTGTGAGCTGGGGAGATGCCTGTGGGGCCCGCAACAGGCCTGGTGTGTACACTCTGGCCTCCAGCTATGCCTCCTGGATCCAAAGCAAGGTGACAGAACTCCAGCCTCGTGTGGTGCCCCAAACCCAGGAGTCCCAGCCCGACAGCAACCTCTGTGGCAGCCACCTGGCCTTCAGCTCTGCCCCAGCCCAGGGCTTGCTGAGGCCCATCCTTTTCCTGCCTCTGGGCCTGGCTCTGGGCCTCCTCTCCCCATGGCTCAGCGAGCACTGAGCTGGCCCTACTTCCAGGATGGATGCATCACACTCAAGGACAGGAGCCTGGTCCTTCCCTGATGGCCTTTGGACCCAGGGCCTGACTTGAGCCACTCCTTCCTTCAGGACTCTGCGGGAGGCTGGGGCCCCATCTTGATCTTTGAGCCCATTCTTCTGGGTGTGCTTTTTGGGACCATCACTGAGAGTCAGGAGTTTTACTGCCTGTAGCAATGGCCAGAGCCTCTGGCCCCTCACCCACCATGGACCAGCCCATTGGCCGAGCTCCTGGGGAGCTCCTGGGACCCTTGGCTATGAAAATGAGCCCTGGCTCCCACCTGTTTCTGGAAGACTGCTCCCGGCCCGCCTGCCCAGACTGATGAGCACATCTCTCTGCCCTCTCCCTGTGTTCTGGGCTGGGGCCACCTTTGTGCAGCTTCGAGGACAGGAAAGGCCCCAATCTTGCCCACTGGCCGCTGAGCGCCCCCGAGCCCTGACTCCTGGACTCCGGAGGACTGAGCCCCCACCGGAACTGGGCTGGCGCTTGGATCTGGGGTGGGAGTAACAGGGCAGAAATGATTAAAATGTTTGAGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000052344:ENST00000317508:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=41.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGTGTGCTGGCTATGTG
R:
GATCCAGGAGGCATAGCTGGA
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development