RnoINT0155086 @ rn6
Intron Retention
Gene
ENSRNOG00000018701 | Tpsg1
Description
tryptase gamma 1 [Source:RGD Symbol;Acc:631355]
Coordinates
chr10:14730360-14731086:+
Coord C1 exon
chr10:14730360-14730505
Coord A exon
chr10:14730506-14730606
Coord C2 exon
chr10:14730607-14731086
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTGACCTTCTGTCCTGCAGGAT
3' ss Score
11.41
Exon sequences
Seq C1 exon
AGCCTCTGAAACCCCCATACAATCTTCAGGAGGCCAAGGTCTCTGTGGTGGATGTAGAGACCTGCAGCCAGGCTTACAGCAGCTCCAACGGCAGCCTCATTCAGTCAGACATGCTATGCGCCTGGGGCCCTGGGGATGCCTGCCAG
Seq A exon
GTGAGCTGGCTGGGAACATGGAGGAATGGTACGCCATGAAGCATGGTGAGAAACCCCCAGGTCCTTAGAACCCCATCTTGTTCTGACCTTCTGTCCTGCAG
Seq C2 exon
GATGACTCTGGAGGGCCACTAGTCTGCCGGGTGGCTGGGATCTGGCAGCAGGCTGGTGTTGTCAGCTGGGGTGAGGGCTGTGGCCGCCCTGACCGCCCTGGCGTCTATGCTCGGGTTACTGCCTATGTAAACTGGATCCACCGCCACATCCTGGAACCAGGGGGCTCAGGAATGCAAGGGCTCTCCTGGATTCCCCTCCTGGCTGGCCTCTTCTTGCCAAGTCTCTTCCTGCTGCTGGTCTCTGGAGTCGTGATGGCCAAGTACTGGCTGGGCTCTCCCTCCCACCCAGCCTTGGAGTTCTGACTGAGGTGCCGCAACCCAAGTGTCTTTCTTAAATAAGTTAGTGTTTATTCAGATTTGCCTTGCCCCTCCCCTCCCCTCCCCTCAGCTTTGACTTAGGAAGCCAAGTTTTCTGCATCAGATTATTGCAACATTTAACCTGAATTTGTAGAAACGGATGACATAAAGCAAATGGATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018701:ENSRNOT00000025236:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCCTCATTCAGTCAGAC
R:
CAGGAGGGGAATCCAGGAGAG
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]