HsaINT1045002 @ hg38
Intron Retention
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:HGNC:14134]
Coordinates
chr16:1221651-1222341:-
Coord C1 exon
chr16:1222196-1222341
Coord A exon
chr16:1222097-1222195
Coord C2 exon
chr16:1221651-1222096
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCGCCTTCTCTGTCCTCAGGAC
3' ss Score
12.37
Exon sequences
Seq C1 exon
AGCCTCTGCCACCCCCGTACAGCCTGCGGGAGGTGAAAGTCTCCGTGGTGGACACAGAGACCTGCCGCCGGGACTATCCCGGCCCCGGGGGCAGCATCCTTCAGCCCGACATGCTGTGTGCCCGGGGCCCCGGGGATGCCTGCCAG
Seq A exon
GTGAGCCTGCCAGGCCGTGACAGAGGATGGGGGCGGCTGAAGCCCAGGGAGGGGCTCCCCATCTTCTCGGCTCCCAATGCTCGCCTTCTCTGTCCTCAG
Seq C2 exon
GACGACTCCGGGGGGCCTCTGGTCTGCCAGGTGAACGGTGCCTGGGTGCAGGCTGGCACTGTGAGCTGGGGTGAGGGCTGCGGCCGCCCCAACAGGCCGGGAGTCTACACTCGTGTCCCTGCCTACGTGAACTGGATCCGCCGCCACATCACAGCATCAGGGGGCTCAGAGTCTGGGTACCCCAGGCTCCCCCTCCTGGCTGGCTTCTTCCTCCCCGGCCTCTTCCTTCTGCTAGTCTCCTGTGTCCTGCTGGCCAAGTGCCTGCTGCACCCATCTGCGGATGGTACTCCCTTCCCCGCCCCTGACTGATGGCAGGAATCCAAGTGCATTTCTTAAATAAGTTACTATTTATTCCGCTCCGCCCCCTCCCTCTCCCTTGAGAAGCTGAGTCTTCTGCATCAGATTATTGCAACATTTAACCTGAATTTAAAAGCACACGAAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176:ENST00000234798:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=43.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTTCAGCCCGACATGC
R:
TAGGCAGGGACACGAGTGTAG
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains