HsaINT0171608 @ hg19
Intron Retention
Gene
ENSG00000198384 | TPTE2P3
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3 [Source:HGNC Symbol;Acc:27345]
Coordinates
chr13:53126588-53126861:+
Coord C1 exon
chr13:53126588-53126669
Coord A exon
chr13:53126670-53126772
Coord C2 exon
chr13:53126773-53126861
Length
103 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
AATCCTAACCTTGAAATCAGGGA
3' ss Score
3.32
Exon sequences
Seq C1 exon
GTGAAAGAGCTTATGATCCTAAGCACTTCCATAATAGGGTCAGTAGAATCATGATCGATGATCATAATGTCCCCACTCTACG
Seq A exon
GTAAGTTTTATGCTAAGTTGACTATGAGAAGGGGGCTAAATCTATTGGGCTTGATTTTTTGAAAATATTTTAACTCAACTAAAAATCCTAACCTTGAAATCAG
Seq C2 exon
GGAGATGGTAGCATTCTCCAAGGAAGTGTTGGAGTGGATGGCTCAAGATTCTGAAAACATCGTAGTGATTCACTGTAAAGGAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198384-TPTE2P3:NR_002793:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAGAGCTTATGATCCTAAGCAC
R:
TTTGCCTCCTTTACAGTGAATCACT
Band lengths:
170-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)