HsaINT0171615 @ hg19
Intron Retention
Gene
ENSG00000198384 | TPTE2P3
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3 [Source:HGNC Symbol;Acc:27345]
Coordinates
chr13:53157231-53158838:+
Coord C1 exon
chr13:53157231-53157323
Coord A exon
chr13:53157324-53158767
Coord C2 exon
chr13:53158768-53158838
Length
1444 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TATTTTTTTTTTCTTTTTAGGAT
3' ss Score
12.76
Exon sequences
Seq C1 exon
GTATTTCATGACACTGAAACAGACAGGGTAATAATTGATGTGTTCAACTGTCCACCTCTGTATGATGATGTGAAAGTGCAAGCTTCCTCTTCG
Seq A exon
GTGAGTAATCAAGAAACGGCCTCTGCCACTGTTCTTATCTGAACTTTTGAATGGTTTTATTTAAGGTTTCCTTTACTACAGTTCCCAACAAGGGAGATGATAGATGTCATCCCATAGAGGGAGGGGGAGAAAATAAATCAGATCTATAACAATTTTTTTAAAAGAACATATGTAATTTGAATAATTTTTGTTCATTTGTTTTTTCTAAATTGTACATTTTCTAAATTTTTCTAAATTTTTCTAAATTTACATGTATTAATTCACAAATCCAAAAAATAGAAAATAAATACAAAAAAAATAAAAGCCAAGATGCTAAAAAACCAAAGGTATGTTTTACTGCATAGCAGTGATTACATTTTGTTTTGCATCATTTTTAATATTACAAATTGAGACAGGTTCTCACTCTGTCACCCCAGCTGGAGTGCAGTGGTGTGACCATAGCTAACTGCAGCTTCACCTCCTGGGCTCATGCAGTCCTCCCACCTCAGCCTCCTGAGTAGCTGGGAGCACTGACTTGAAAGAGAGTTAGGTTTGGGTGACTCAGTTGGGTGAAGCACAGAGAAGGCAGCACAATACAACACATGAAATAACCAAAGCAGTTTTTTATTAATTCCAGAGAGAAGAGGGCAGCACACCTCGCAGGGCTAACTGGAAGGGGGAGCCATCCAGGAGACCTGTGCTCAACTGATGGGTGGGGAGCAATAGCGAGAACGAGGGAGGGACCTGAGAGTGGAAGCCTTTATTGGGATGTAAGGTGTTACCTGAGCAGGTTTCCTACGGGGAGGTCTAACTGGTGGATTTAATGCAAGCAGTCATGAGTTCCATGGAGTCATGCTGTGACTGAGAGGTGGTCATTGATATATCCACATGGTCCATGCAGAGTATGGGGGTCTGTAGGGAGGTTATATCTAGCTGTCCCATAATGAAGTAGTCACCAACAGAAGGTTGTATAAGGCAGATACTGGGATCAGTCACATTGAGAAACCTGGAGGAGGTGAACTGGAAACTGTCAAGGGTGACTGAACCCTGCTTCTGATATCAGAAAGTCCAATTTATATTTGAAAGGGATGCTGAGGCACAAAAAAATTGTAAGAATTCACTACAAAAATACTTGGCTATATATAAGGATAGGTCCTTAGTAGATTCTGTTTAGCACTATCTAAACCAGATTCAAATTTCAGCATTTAAATTAAATATCTATCATGGAAAATAAACTATTCCTTGAAAATTTTGATAGAAATAGCAAGAGAAAGCAATAGCATTTTCTTAAGCCTCCTCCTCTGTGTCTTGAGTGTGTTGTTATAGAATGCAGAGTGCTACATATTGAATGGTTATAATTATTTGATAAATATATAAAGGAATAAAGGAAGGAACTTTGATTTCTTTGGAATGATTAGTTCTTGGCATCAATTTTACTTTTAAAATATTTTTTTTTTCTTTTTAG
Seq C2 exon
GATTTTCCTAAATACTATCACAACTACCCTTTTTTCTTCTGGTTTAACACATCTTTAATACAAAATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198384-TPTE2P3:NR_002793:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)