BtaINT0002517 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21792830-21794273:+
Coord C1 exon
chr12:21792830-21792925
Coord A exon
chr12:21792926-21794202
Coord C2 exon
chr12:21794203-21794273
Length
1277 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TTAAAACCATGTCTTTTTAGGCT
3' ss Score
7.91
Exon sequences
Seq C1 exon
ATATTTCATGATGCTGAAACAGACAGAGTAATAATCTTGCTCTCTAAGTGCCCACCTCTGTATGATGAGGTAAAAGTGAGATTTTTCTCTTCTTCG
Seq A exon
GTGAGTAATCAAGAACAACCTATGCTGTTCATCTCATCTAGTCTTGTGAATGCTTCTGATTTGGGATCTCCTTGACTATAATTCCCAATAAGCGAGATGACAGGCAATGTCAACCCCAAGACGGGGAGGGGAAGAAAACAAGTCAGATTACTATAAAGAATTTTTTAAAATAAGAAAATATGTAAGGAAACCCTTTTTCGTTGTTTTCTAAATTCTATACAATTTGCATGTGTTCATTTTCGAGTAAGAAAAAAATACAAAAACCAGGATGTTAAAAACAATGTATGTCTTACTACATAGCAGTGATCATATTTTTGCTTTGTATCTTTGAAACACATTTCTCCCCATAACTTATAAAATACTTTAAAGGGAGGGAGGTTTAACTTTCCTCGTAATTGATGTATAATTCATTTAAAACAGTATATTTAATCCAATATTTATGAAATATGTCTGCCGCTGTCAGTACATTATCATGAGGGTATAATTATGTTGACCAGTTAGCAAATGTCTGATTATTCTGTATATGGCAGTATTCTGTACATAGTAAACTTCTAAGCCTCAATTGCTAGTTCATTTTCCTATAACATCATCAACCAGAACTGCCAACACATAACTGTGTTGCTCAATTGAAAGCTTATTTCCTTCATCCCCCGCTTGCTCCCTGTTGGGGAGAACTTACTAAGTTTGAAGTGGTAAATGTGTTGAAGCAGGTGACCTGGAAAGTTCCCCTCGAGTAATGGAGCCAGTCTGAGTTCTCTTAATCAGTGGTCTCTAAGCAGAAGCGCTAATGTGGGGATGCTGGTTTTATCTGGCCTTTGTGATTTTCAGGCCCATGAGATGAAAGCCCTTTTGGAAATTTTAGCTATTTCTATCATCATTATCGATAGTGGTTAATTATCTAATGTAGCTGTTCTTTGTAAAAATGGATGATACACTGGGGCAGAAATCGGCATAGTCCTTAGTAGATTCTGTTTAGCGCTATCCAAACCTGATTAAAATACCAGTGTCTAAATTTATAAATATCTATCATAGAGAAAATACATTTCCTTGAAAATTTTGCTGGAAAAGGCAAGAGAAAGGAACGGTAATCTCTTAAAGTCTCCTCCTAGGTGACTTGAATATAATGTTGACTAGAAGTGCTGCATTTTAATAACTACAACTATTTGATGAACACACAAGTGAATAAAGGAAGGAATTTTAATCCCTCTGAAATGACTATTTTTCACAGTTACATGGATACCAAGAACTAATTGTTGTTTAAAACCATGTCTTTTTAG
Seq C2 exon
GCTCTTCCTAAATACTACGAAAACTGTGCATTCTTCTTCTGGTTCCATATGTCTTTTATACGAAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654:ENSBTAT00000035777:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(22.8=100)
A:
NA
C2:
PF104094=PTEN_C2=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development