HsaINT0171684 @ hg19
Intron Retention
Gene
ENSG00000127191 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:12032]
Coordinates
chr9:139810993-139814967:+
Coord C1 exon
chr9:139810993-139811067
Coord A exon
chr9:139811068-139814685
Coord C2 exon
chr9:139814686-139814967
Length
3618 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TCCCTGCCCTGTGTCCGCAGGTA
3' ss Score
13.28
Exon sequences
Seq C1 exon
TTTCAGGACCACGTCAAGACTTGTGGCAAGTGTCGAGTCCCTTGCAGATTCCACGCCATCGGCTGCCTCGAGACG
Seq A exon
GTGAGTCGGGGGGTCTGAGGTTGGGGGCCACCCCTCATCCTGGGTGTGGTCTTCACTGCCTCCAGCCCAGTGCTTCCTGGTTTCCTTCCAGCTGCTCCTCAGCCACCTCTGCAGCACTGCCTCCTCCTGCCCCGGCTGTCCGAGTGTTCCCAGCTTGGTCTCTGGGCTGGCAGCCCTGTCCACTCCCTCCTGGTGGCATTGTAGTGCCTGGCTTTGACTGCCACCTGTCTCTGAGGATGCCCAGTGTGTGTGCCCACCTGTCGCCTTGAGCCTCCCTGGGTGTTGAGTGCACGTCTCAGATGTACCCGGCCGGCTCGCCACGACCACTCCTTGGCCGCTGTCTCCCTGCCCCCATCTCACACAGAAAAGGGCAGCACTCTAACCCAGCGGCTGTCGCTGAGCCCTCCGCCACCAGCAGGCACTCGGGCCCCTCCTCTCGCCTCATGCTTCACGTTCGGGCTGACAGAGGTCTCGTCTACCCTCAAATGGTCCCCCCAGCCGTCACTGCCCTGTCCACATCATCCTCATCTCTCACTGGGACCCAGGCTCAGGCGCTTATGGGACCCCCGTTCTTTTCCGTTCTGGCCTGTTCACAGATGGAAATCGATCACAGCTCTTCCTCATGGCTTCTCATTCAGAGTGGCCTGCTCCTGTGATCTTTCCCTCCCCTCAGCTATCTCCTCTGCCCTGCTCGCTGGCCTGAGCTTCCTTGGGCATGCCCACTTGTGCCCACCCCAGGCACTTGGGCACTGGCACAATGGCCAGGCGCCTGGGTCTCTCCAGGTGGACCCCCCTGCTCCACCCCTGCAGACTCTGCCCCTCTGTCGCCAGCACCTCGTGTCTTTGTCTCTTGTCCGTCTTGCCCTGTACAACAGGAGCCCCTTGAGGTCAGGACCCTCGAGGAGTACTGGGCCCAGAGGTGGTCCCCAGCTGAGGTGTGTGCCTGATGGATGGAGAGGGGCAGGCCGTGGGTGCAGACCCTCCCCTGGCCAGCTCACTGGGCGGGCACCTTCCTTGCTTGAAGACAGGGATGTCTTGACGGCATTTGTGGTAGAGTCAGTTGCTGACTTGATTCTATGTGGCCTTAGGTATTGTGTTTTTTTCCTAATGGTGAAAAGGAGCGTGGCTGCTTCCATTTTCTTTGTCTGCGTTGGATAGTCTTCTGCTGTCCGTGTTCTTGTCTGTTTCCTGCTCTGACGTGGCATCTGCCATCTCTAGGAAGCCCAGGCTTCCCGTGCGGGAGGTTGCGTAGTGACCACCCGGGCCTCAGTGGTGCTTGCTGCCGCCACCGTGCTCCTTGTTTCTGGGCCTCTTGGTGTTGAGAAATGAGAGAGAACACAGCGTGAGTCTGTGGCGATGCTCGCTTCCCGTTTGCACAAAGGATCTCCCCGTGCTGGCACACCCACCCCAGGCTCAGCCAGGGCCTGCTTTTTCCACGCCGCGCACAGCATGGTCCCAACAGCAGCACTCTCTGAGAAAATGCAGGGCGAGCTCTCGTCCAGCTGTTTGTGTCTTGAGTGCCCTTCTGCTCTCTGGGTGGTCATGCCTCTAGCTGGGTACACATGTAGGTCCATTTGTTTCTTTTACTGTAATTTTTTTAGAGTGTTTTGTTTATATATATATATATATATATATATATATATTTATTTAATTAATTAATTTATTTATTTTTGAGGTTGAGTCTTGCTTTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAACAATTCTTGTGCCTCAGCCTCCCAAGTAGGTGATAAAAGGCCCAAGTAGCTGTGATCACAGCTGTGTGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATGTTGCCCAGGCTGGTCTCGAACTTCTGACCTCAAGTGATCCTCCTGCCTCAGCCTCCTAAAGTGCTGGGATTACAGGCATGACCGCGCCTGGCCTCATTTTCAAATTTTGTTGTGGAAATTTGAAAATAATTTAATTGCAAAGTCAAGTCTATAAAATGAGGTATGTTTAAGGAGGCCTAGCTTCCAGCCCTGTGTTTTCACCTTCCCCTGTGGGTGGCTTTTTATTTCTTATTTTATTTTGTTTTATTTCATTTTATTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGTACTCTCCTGCCTCAGCCTTCCGGGAAGCTGGGATTACAAGCACACACCACCAGGCCCAGCTAATTTTTGTATTTTTAGTAGAGATAGGGTTTTGCCATGTTGACCAGGCTAGTCTCAAACTCCTGACCTCAGGTGATCCGCCCACTTCAGCCTCCCAAAGTACTGGGATTACAGGTGTGAGCCACTGCACCTGGCCTATTTTAATATTTATTTATTTATTTATTTATTTATTTATTTTCGAAACAGAGTCTCGCTCTGTTGGCCAGGCTGGAAGTGCAGTGGCACCATCTCAGCTCACTACAGCCTCCCTCTCCTGGGTTCAAACTATTCTCATGCCTCAGTCTCCCGAGTAGCTGGAATTACAGACATGTGCCACCATGCCCAGCTAATTTTTGTAGCTTTACTAGAGACAGGGTTTCACCATGTTGCCCAGGCTTCTCTGGAACTTGTGGGTGGCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTCGCTCTTGTTGCCCAGACTAGAGTACAGTGGCGCGATCTCGGCTCACCACAACCTCCACCTCCCGGGTTCAAACAGTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTGCACCACCACGCCCTGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTAGTCTCGAACTCCCGACCTCAGGTGATCCTCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGGGAGCCACCATGCCCAGTCATGAGTAGCTTTTTTAAAATGGTGTGTTGCTTTTATTTTTCTTTTCTCTTCCTTTCTGTCCCTCCCCCTCCTTCTTTCCCTCCCCTTCTTCCCTTCATCCCTTCATCTCGTCCTGTCCCGTCCCTTTTTTCTTTTCTTCCAAACAGGGTTTTGCTGTGTCAGCCAGGCAGGGATGCAGTGGTATGATCTCGGCTCACTGCAGCGTCAACCTCCTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGAACCACTGGCACACACCACCATGCCCAGCTAATTTTTAAAAATTTTTTGTAGACGTGGGGTTTTGCCATGTTGCCCCAGCTAGTCTCCAACTCCTGGGCCCAAATGATCCTCCCGCTTTGGCCTTCTGAAGTGCTGGAATCACAGTTGCTAGCTACTGTGCCTGGCTGCAACTAAGTTCTATAGCTTCACGTTCTTTAAACACACCTGACTTTCAGTCTGTCATACACAAGAAGGATCAGCCATGACCAGGCCACCCAGGCATCCCTATCTATGACCCTGGCCTGTCTCCTCAGCTCAGCTGAGGCCCACGTCTTGGTGGCCGTCCCCGGGTGGGAGCCGAATGGTGGATGGAGCCAGCAGCCTCCCTGCCCTGTGTCCGCAG
Seq C2 exon
GTAGAGGGTGAGAAACAGCAGGAGCACGAGGTGCAGTGGCTGCGGGAGCACCTGGCCATGCTACTGAGCTCGGTGCTGGAGGCAAAGCCCCTCTTGGGAGACCAGAGCCACGCGGGGTCAGAGCTCCTGCAGAGGTGCGAGAGCCTGGAGAAGAAGACGGCCACTTTTGAGAACATTGTCTGCGTCCTGAACCGGGAGGTGGAGAGGGTGGCCATGACTGCCGAGGCCTGCAGCCGGCAGCACCGGCTGGACCAAGACAAGATTGAAGCCCTGAGTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127191-TRAF2:NM_021138:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=FE(41.4=100),PF045827=Reo_sigmaC=PU(2.9=16.0)
A:
NA
C2:
PF0217613=zf-TRAF=PD(13.8=8.5),PF045827=Reo_sigmaC=FE(67.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)