MmuINT0164483 @ mm10
Intron Retention
Gene
ENSMUSG00000026942 | Traf2
Description
TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]
Coordinates
chr2:25524867-25527548:-
Coord C1 exon
chr2:25527474-25527548
Coord A exon
chr2:25525149-25527473
Coord C2 exon
chr2:25524867-25525148
Length
2325 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
GCTCTTGTCCTGTCCCACAGGTG
3' ss Score
11.81
Exon sequences
Seq C1 exon
TTTCAGGACCATGTTAGAGCATGCAGCAAATGCCGGGTTCTCTGCAGATTCCACACCGTTGGCTGTTCAGAGATG
Seq A exon
GTAAGCCATGGGGCTGCTCTTAGGGACTAGGAACCTGGGTGGGTCTTTCCCTTATGATAAACAGTCTCCAGCTCTGGTTCCTCCTAGGTTCTTCCACCTCTCTGTTATCTCTCCTGGCTATCTCTCAGCACCCCTTCTTGCTGCCCTCAGGTGTCCAGGCTTGCCCTCTTGAGATCTAAGAACACACAAGTATATGTGCTCCTGGCACCTTGCACTTCCCAGAATGCCTAGTGGAGGCCTTAGAGCCACACCTTGGTCTTCTGTGTTCTTGCTGTCTACTTCTTCCCATCTCTCCCATGAAAGGAGAGCACACTTTAGCTCAGCTGCCTAGCCAAAGTCCCCGAGCCCAGAGGTCTGGCAGATCTTCCTCTTGTGTCATATTTCACATGCATACTGACAAATCCTTGGCTGTTGGCAGATGGATCCTGTCCCTCCAACTGCTATCTTGTCACCTCATCATCTCTTGCCTGGACACAGGCTTTATGTATTAGCCTATCTTGCCCCTTCATATTCAGCCTGTCACAGGCTATTTCTTTCTCTGTACAGTGGGACCCCCCATGTCCTTTCATGACGAGTGAACATGTGCTGGTCCACAGTGGGCCTATAGGATGTGAACATTCAGGGGAAGAGGAGGAGGCAAGCTGAGGATGCCGTGTCTGGGGCAGGGCGTCTCTGCTCTCTTATATGTAGTGGTGGGGATAGTTACAGCCTCGATTTCAAGGCAGCTGAGTTCCCTGCAGAAGGTAGATTAGAAGCTACCAGGAAACTGAGCTGCTGTAACCTTGAGCCTAGGATCTGTGCGTGTTCAGTTCGTGGGGAGCTCCAGTTCGTCTCTGACCTTGTTTGTGGGAACCTTGCTGACCCATGCTGAGGAAGCCACTAAGCTGACTAGTGCCTGCCCAGGAGGTGCAGGGTCACCTGCTTATGTACCCTGTCGTCCAGGAGGCTGTGCCCCCACTGGGAACACAGATGTCTTGCTTTCTGTTTACTTACGTTTTGAGTGTCTTTGTAAAATTATTTTATTTTGTTATGATTTTTATTTTTTATTACATCTGTGGGTACATGTAAGCCATGGCAGCATGCACATGAAACCAGAAGAAGCTTTTAGAGCTGACTCTGTCCTTCCAACACATGGGTCCCGGGCTGAACTCAAAGATCAGGCTTGCGGACAGCACATCTACATGCTAAGCCTTCCCTAGTGTTGCTTGAGATTGGGTTTGTTGGTTTTTGTTGTTGTCGTTGTTTGTTCTTTGTTTTGCTTTGTTTTTAAAGATTTATTTATTTATTTTATGTGAGTATACTGCTGCTCTTTTTTTTTAAAGATTTATTTATTATTATATCTAAGTACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGAGCCCTGAGTTTGTTTTTTTTTGTTGTTTTGTTTGTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACAGGGTTTTTTTTTGTCCCCTGTATGTAACTCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCGGCTCCGGGTTTGGTTTTTAATTGACAGATTCTCATTATGTAGCCCAGGCTGGCCTTGCACTCATAGAAACTCTTCTGTCTCTGCCTTCTAAGTACTGGGATTGAATGCATTTGCCACTGTACCTGTTTATCTTTCTTAATTAGCATATAGTCTAATGGTACTATAGTCATTTTGAAATGTAAGACCTTAAATTTTTTTGCACAAGCTTGAATATGCTCAAATAGTGGCTTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCTAATTTCTTAGTTCAAGGTCATCCTGGTCTACAGTGTGAGTTCCAGGACAGTCTGGACTACACAAAGAAACCCTGTCTCAAAAAAAAACAAACAAAAAAGCAAGTTTGAAAGTACCTAGTTGTGACTTAATTACTTTTCTGTTGCTGTGTAAAGATTTACACAGTTTCAGAAGGTTAGAATCTATGTCCATCATCATGGGCAGCACGGGAGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGTAGGCAGGCAGGCAGGTATGGTGCTGGAGCGATAGCTGAGTGCTCACATCCTGAGAGAGAAGCACATGTCCTAATGGATGTCAGTCCAGTGTGGCTCATGGTGCCGCACTGTTCAGGCTAGTTCTGTACAGACACCATGCCAAGAGCTCTTGTCCTGTCCCACAG
Seq C2 exon
GTGGAGACTGAGAACCTGCAGGATCATGAGCTGCAGCGGCTACGGGAACACCTAGCCCTACTGCTGAGCTCATTCTTGGAGGCCCAAGCCTCTCCAGGAACCTTGAACCAGGTGGGGCCAGAGCTACTCCAGCGGTGCCAGATTTTGGAGCAGAAGATAGCAACCTTTGAGAACATTGTCTGCGTCTTGAACCGTGAAGTAGAGAGGGTAGCAGTGACTGCAGAGGCTTGTAGCCGGCAGCACCGGCTAGACCAGGACAAGATTGAGGCCCTGAGTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026942:ENSMUST00000028311:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=FE(41.4=100)
A:
NA
C2:
PF0217613=zf-TRAF=PD(13.8=8.5),PF045827=Reo_sigmaC=PU(69.5=94.7),PF140731=Cep57_CLD=PU(67.0=64.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types