HsaINT0171693 @ hg38
Intron Retention
Gene
ENSG00000131323 | TRAF3
Description
TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr14:102871917-102875728:+
Coord C1 exon
chr14:102871917-102871968
Coord A exon
chr14:102871969-102875623
Coord C2 exon
chr14:102875624-102875728
Length
3655 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
TAATGATCTTTCATTTTCAGGTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
CTCTTCAAGTCCAAAATGTACAGCGTGTCAAGAGAGCATCGTTAAAGATAAG
Seq A exon
GTATTCTGGGGTTTTTTTTAATCATTTTGTCACATGTTTTCAGCTGGGTAATACTTTTCACATAGTTTGCATTCGGCACTCTGGCACAACACATTCTCTCAGTTTTGGCAGCTGATGCGGCAGGCTCCCAGGCAGGACACTGTGCCATGTGATCACCTGGGCAGACAGTGGATTCAGATCCACTTGGCCACTTCCCTACTGTGTGAACTCTGTGAGCTACTTCACCCCCTCACCTGTAATAATCATATCACCTGCTAAGACCGCAGGGAGCTGGTGTGAGGAGTAAGGGGTTGATGTGAGCAAAGTGCTGAGATGCCTGTCTGTGGCAGGGCTGTCTGTGGTTGGGTCACTTCCGTCATTGCAGGTCTTTATCCCAGACAGCTTCTACTCAACTCTTACACTAGGTTTTACCTTCAGACTCGCTAGGCTGAGGGGTTCATTTGAGTTTGTGCTCCCTGCCCCCCAGGCCCCCTGTGATATCTTTAAGTCATTAGACATGAGTGAGATTAGCCCCTTCTCGCCCCCTGTGGCTGTCCTCAGCTAGAGCCCGTGGGCGTCTCTGCACATTCAGAGGATGGGGCTGCCCAGCCTGCCACCAGCTTCTCTCCTGGGGCCTGGTCCTTCTCATGGAGACTGACAGTCATCCATGTGCTGCTGTACCCTGCCAGGTATACTTGGAGTTTGAAACAATTCTTTTCTTTTCTTTCTCTCTCCTTTCTTTCTTCTTTTTCTTTTTTTTTTGCGACAGAGTTCACTCTTGTTGCACAGGCTGGAGCACAATGGCACGATCTTGGCTCGCTGCAGCCTCCACCTCCCAGGTTCAAGCAATTCTCATGCCGCAGCCTCCCGAGTAGCTGGGATTACAGGCACGAGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTGGTTAGGCCAGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCAGCAATTCATTCTTAAAGTGCTTAAAATATCAATAAAAATGTGTGTTTCCCTACTTTGAGTAATATACCTAACCATTTTTTAAATGCAGGTCACTAAGTTGTACAATAAAATTCTTACTCTGGGGTTTTCCTGTCTAAAGCACCTTGCAGATTGGGTTTGTTGGTCAGAGCAGCCCAGGTGAGTGCAGTGATTTGAGGATTGCTGGTAGTCAGTGTCCCTGGGCTGCCAGGCACACAGGCATCCAGTATAGCCGCTCTGGAAGGGGGAGAGATGGAATTGGCCACCTGGCCCTGTACCTTTTCTTTCTCTGCATTTACCTGCTGCTGCTGCAGGCTTGGTTAGTTCCTTGAGTGAAAACAGCCCCTCCCCTCCACTCTGTGCCTTGGCCTAGCATGGTACTCGGCCGCCTTGTTAACATGTGCCTAACGTGTGAGTGAGAGAGAAGCTCGCGACGATGGCTGAGATGTTTTTTTAGTATCTCTGTTTTGTTATGCAGAATCATTATCCCTATTTTTTAATGACATAAGTAGCTGAAGAAAAATGGCTAGTTTTATCAAAGAATCATGAACGAGATGCACTCAAGTTGTGGACCCTCATGGAGAGAATGGAGCTGTCTGGGCCCCGGGTGACCCGGATCCTCACCCGTCAGCAGGTCATCCAGGGGTGGGCGGGCCTCTGGTCTTCATCTGTAAACAGAGACATTTTGAGTAAATAGTCTCAGATCCTTTCCATTCCAAAGTTCTGTTGACTTTAGTATCTCAAGTCATGACCTTCTTTTTTTTTTAGTCATGTTTATGAAAGATAAGCTTTGGCTCCAAATTAGTTTATTTTTAACTCTTAACAGCTGTTGATTTTATTTCTCTCAGCAGTCCAAAAAGGCACATTAAGCTCCTGTTATTCCACTTTCATAGAGCAACAGGCAGGAGTTTCTTAGAAATAACCTTTGGACTAAGATGTTGTAGATCGTGTTGTTAGAAAGAGTGAGAGGGAGCTGGGCATGGTGCCTTATGCCTGGGATCCCAGGACTTTGGGAGGCTGAGGCAGGTGGATCACTTGGGCTCAGGAGTTCGAGACCAGAGTGGGCAGCATATGGAGACCCCATCTCTACAAAAATGAAAATTAAAAAGTTACCTGGGCTTGGAGGCATGCGCCTGTAGTTCAAGCCACTCAGGAGGCTGAGGTGAGAGGATCGCTTGAGCCCAGGAGTTTAAGGGTGTAGTGAAGCCATGATTGCACCAGTGCGCTCCAGCCTGGGTGACAGAGTGAAACCCACCCTGTCTCTTTTTGAGACAGAGTCTCACTCTCTTGCCCAGGCTGGAGTACAATGGCGTGATCTCAGCTCACTGCAACCTCCTCCTCCCGGGTTCAAGCGATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCCACCACACCCGGTTAATTTTTTTGTATTTCTAGTAGAGATGGGGTTTCACCGTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGAGGTGAGTCACTGTTCCCAGTCAACCCTGTCTCTTAAAAAAAGAGTGAGAATGAGAATACTTGTGTTTTCTAAGGGAAAAATAAAATTAAAAGTTGAAAGGTTTTTTCTTCTTCTTTTTTTTTTTTTTAAAGAAATGGGGGTCTCCCACTGTCGCCCAGTCTGGAGTGCAGCAGTGCGATCATGGCTCACTGCATCCTCTACCTGCCAGGCTAAAGCAGTCCTCTTGCCTCAGCCTCCTGAGTAGCTGAGACTGCAGGCGCATATGCTGCCTTGCCCAGCTAATTTTTTAAAAAAATTTTTGTAGAGATAGGGTCTCATTGTGTTGCCTAGGCTGGTCTCAAACTCCTGGACTCAAGCAATCCTCCTGCCTCGGTTTCCCAAAGTGCTGGGATTTTAGGCTTCAGCTACCACGCCCAGCCTCGTTTTCATTTTCAAAGGGAAATCTTTTCATTATTAGACTAACTTCAGACTGCAATATATGTTTAAAGAGAGTGTTTTTCAACCACAGGCTAATGCTGCTTTTTTTGGTGAAAAATGAGTTTTAACAGCATGACCTTTAGAAGGAACCAACAGTTTTACAAATCATTCCCCAAATATGGTCTCTTATGTGGTCTCTCCATTTCTCCAGCAAGCGATCTATACAATGTATTCAGTTGTGTCCAGTTCTGCTCTTGTCCTCTGGTGACAGCTGCACCATAATGGCCACCTGCTCCGTGCTGGCTCCCGGAAGGCCCCAGAGTCTGAATGTGAACCTGGTCCTCCTCTGCCCTCATCCTGAAATTATGTCAAAGTTAATAGAAGATGTTTAGATGCTCCAGAGTGATCGTTAATTATCAAGTCTAATTCATTTTCTTTTGGCTTAACTAATAAAAGATAACAGTTAATGTTATTTAAATTGTGTCTCTTAGTGGGGGCAGCTTCTTCATTCTACTTCTAGAAATCAAGATGGTCCTTAATGCTTTCTGAAGTTCACTTAAGAGTTCCTCTCTTGTTTTTTTTTTTTAAGTGGTTTTGCCTTGTCCAAAGTAGCAGCATGTGGAGATTAAGAAATATTAATCCTCCAAAATAATGATCTTTCATTTTCAG
Seq C2 exon
GTGTTTAAGGATAATTGCTGCAAGAGAGAAATTCTGGCTCTTCAGATCTATTGTCGGAATGAAAGCAGAGGTTGTGCAGAGCAGTTAATGCTGGGACATCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323:ENST00000560371:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains