RnoINT0155200 @ rn6
Intron Retention
Gene
ENSRNOG00000008145 | Traf3
Description
Tnf receptor-associated factor 3 [Source:RGD Symbol;Acc:1304633]
Coordinates
chr6:135691943-135695607:+
Coord C1 exon
chr6:135691943-135691994
Coord A exon
chr6:135691995-135695502
Coord C2 exon
chr6:135695503-135695607
Length
3508 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
CTCACTGCTCCTCAATTCAGGTG
3' ss Score
9.74
Exon sequences
Seq C1 exon
CTCCTCAAGTCCAAAATGCACAGCCTGCCAAGAAAGCATCATCAAAGACAAG
Seq A exon
GTATGCTTGCCCATTCATTTCCTCAGATGAGACTTGCTCTGTAGTTCAGGGCATCCCCAAGCGTAATGGCTCTTCCTGCCTCGGCCTCTGAGTACAGGGTACGCCACCATTCTGGGCTTTTTTAGGTGGCTGACACATTTCACATAGCTTGTGTTTGGTGCTGTGGAATTCAGTTTAAATTTTTACTCAATTTCTTATTGGAAGGAGGTGCACATGTGCTGTGCTGTGGTGTTCATGTAGAGGTCAGAGTACAACCTTGTGGAGTTCTCTCTTCTTTTAAGTCGGTCTAGGGATCAAATTGAGGTTGCCAGCCTTGCAGAGAAAGTACTTTTCAATGATACAATGTATCAAAATTCAGTTGTTTTACTTTAAAAAAAAAAAAAGTTGCACACCTTTAATCCCAGTGCTTTCTGGGAATTGGAGGCCAGCCTGGTCTACAGAGCAAGATTCAGGACAGTCAGGGCTACATAATAGAGACCTTTTCTCAGAAGCAGTTATTATGTCCGTGCGGAGGTGAGGGTAGGAGGCTAGCTTAAGCCGGCCTTGAGCTACTCAGTAGCTGAGGTCCTGTCCCCATCTCCCAAGGCCTGGGATCCCAGGTGTGCACTCCCACATCCAGCTTTTGCAATACTAAAGATCTGACTCAGGGCTTCAGCTACTCTAGGTAAGCACACCACTACTGAGTTAGATCTCCGGTCCCTTGGGGTTGGTTGGTTGGTTTGTTGGTTTGAGACAGGGTTTCACTGTGCAGCTCTGGCAGGCCTTGAAATCACAGAGACCTACCTCCCTCTGCCTCCACATATGCAAAGTCCCTTGGTTTTTTCCCTTGGTTTGTTTTGATGTTGGAGATTGGATCTTCCACTGTGGCCCAGACTGGCCTTAAAGTCATATCGGCTCTCCTGCCTCAGCCTCCTAGGGTCGCAGACCTGTCCCACAACACTCAGCTCTTAGTTTGACAATGGTGCTGCATGCTCCAAGGCCCAGCGTGTGCTGTGTGAGCGCCTGGGCAGACTGGGTGTAGGGAAAAGTCAAACGGCCGTCAGTCTTCAGCCGTGATTTCTCGAGGCAGGCTGTCCTCTAGTCACTTGCTTTGCACATAACAGTATCAGTCTGACCTGCTAATTCATGGCAAGCTGTGTCCGGAGCTGTGAGAAGTGCTGAGATGCCTGTCAGGGCAGTGGCTGGCTGTGGCACTGCTGTCTTAGAGCATTCTGTCTCATACAGACACTAGGTTTTACCTCAGACATGCCACTGGGAAGGGGCTGTTTAAATTTGTTCTTGCTCCCCCTTACAGCGTCTTAAAGTTCTCAGACACTGAATGAGATCAGCTGCCCTCTGACCCCGCATGGCTGTCAGCATTGGCACACTTAGGGTGGCTACCACTGAGGCCTCCCCTATCTTCTTCCAGAAAAACCCCATCCCTTCCCTTTTCTCTGGCACACGGCCACCCACGTACTTCTAAGCCCTTCCAGGTACATTTGTAGCTTGAAACAGCTCATTCTTAAGGACTTAAATATCAATACAAATGTGTGTGATTCCAATATTTTGATTAATGAACCTAACAGTTTTTAAATGTAGGCTATTAAATTCCACACTAAGAATCTTGCTCTGGGGTTTCCTGTCCAAAGCACTTACAAGTGCTGGACTTGCTGGTCAGGGCAGCCGGGTGAGGCTGCTTGGCCACAGGGCCCTGTCTGCTGGGCTCCAGGAAGAAGGCATCTGATGGAACGTGTTCGGGAGAGTTAGGGGAGTTAGCCAGCCCTCCAAGCTGGGTCTTAGAAACTAGCATGTCTGCTGCGAAGACTCCAGTCAGTTATAAGAAGCAGGCCACGAGCCCACGCCTTTTTTAAAATGGTGTGCCTCCCTTGGTCTCACAAGTGACCAAGAGAAAGGAGTTAAAGCCACAAGCCAAGGAGCCCTTTTGAAGCATCTCTATTTCATTCACACCATGAGTCCCATTTCTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCTTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCATGAGCCCCATTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTGGTTTGGTTTGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTAACTTAAGACAGGTTCTCTGTGTAGCTCTGGCTGTCCTGGAGCACACTGTGTAGACCGGCTGTCCTCAAATCAGAGATTCGTTCTGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCGGCCCTTGCTTTCCGCGCCGGGATTAAAAGCCACCGTGCCAGCTTCCATCTTAATTTTTGAAACAGGATCGCTGACCCTGGAGTTTGCTGATTGGCTGGCCTAGCTGGCCAGTGAGCTCCAGAGCCTCTCTCTGCCCCTCCCCCTGGCCCCAGCACTTGGATTTCAGGTGCACACCACCATCGGAGATTTGTGTGTAGTGCATAGCAGGCACTTCACTGACTGGGGTCTCTGTTTCGAAAAGCGTATCCGCTATCTGTCTCCGCCTGGACAGAAGGACTAAGTATTGACAGGTGGGAGCGTCTCGACGCCTGAGGACTGAGGCGCTGTGGACTGTTGTTAGAGACAGACTGCCTGTTTTCTAAAGAAAGGTAAAATTGAAGGCAAGCAGGTGTTCATTTTTAGGACACCGCTCAGTGCCAGCTCATCCTTGTAGCATTTATTTAAAGCTTCCTTTGGACTAAGACGCGGCTCAGTGCTGGAGTGTTTTCCTAGAATGCTCAAGGCCCCGGGACTCCATCTCCAGTGCTGGGAGAAAAGGAAATTAAAAAGGAAACGTTCTTTGGCGAAAACTGAGTTATAAGCAGCGTATACCCCGGAGGGCACCGAAATTGTTTTACAGATTGTCCCAAAATATCGTCTCCACAACTATCAGTCTGGTTCTCTAACGAGCATTTTGAGCAGTGCATTGAGCTGCCAATTCCTTTGGCAAGAGGTGCACTCCAGGCCGTCTGCTCCTTGTTGGCTGGGAGCTGGAGCCCGCCTTGTCTGGAGGCCGTGGCGGTGTTCAAGGACCTAGTGCTCTAAAATGTCTTCACCCCAAACGTCTTTTTGCTTACCTAATAAAAGATAGTGGTCACAGCTATATGAGATAAATGGTGTCTCTTAGTGGGGCCAGCTCCTTCATTCTACTTACGGAAATTAAGACATCCTTACTGCTTCCTAAGGCCCACTTAACAGTTGCTCTTCGGATCTTTAGAGTGGTTTAGCCCTGTCCAAAATTGCAACGAGTGAAGATTAGGAAGCATTAATCCTCTCACTGCTCCTCAATTCAG
Seq C2 exon
GTGTTCAAGGATAATTGCTGCAAGAGAGAGATCCTGGCCCTTCAGATCTACTGTCGGAACGAAGGCAGAGGCTGCGTGGAGCAGCTGACTCTGGGACATCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008145:ENSRNOT00000010906:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PD(23.1=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]