HsaINT0171697 @ hg19
Intron Retention
Gene
ENSG00000131323 | TRAF3
Description
TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:12033]
Coordinates
chr14:103355897-103357754:+
Coord C1 exon
chr14:103355897-103355971
Coord A exon
chr14:103355972-103357661
Coord C2 exon
chr14:103357662-103357754
Length
1690 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TCACATGTTTGCTCTCGCAGGGG
3' ss Score
9.5
Exon sequences
Seq C1 exon
TTGAGTGCACACTTGTCAGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
Seq A exon
GTCAGTATCCGACATTTGTCCTTCCCAGTCACTGACATTCTGCCATGAGAGAAAGTTATTATATTAACATTTTAACATGCAAGCTCTGGACTCCTTATTCTTTGTCATGAAACTGAAACACCCTGTTGCATGGGTGACGAAAGCCACATGCAGCAGGTGGGATGCTCGCTTTCCAGTTGGTGGTGCTTTGAGACTTCAGGGAGACACTGTGCTGAGGTGGAAGTTAATACATTAAGAGAAGTACTACATCCAAAACCAGCTAGTAATGCAACAGGTAGACTTGACATTTGGTGGGGTTTTCAGATAGATTGTTACGGAAATTTTAGCAGTTACCTGAATATAAGCGAATATCAAACTGAGCATAGTTTCAACAGCGTGTGTGTCAGTACACAGCCATAACGATCACACACGTGTGTATCCATAAATGCATTTGATGTACATGTCTGTGCTGACTCTGACCCCAACGGGGGACAGACGCAAAATGGAGCACAGCTCATAGAGAGCACACCTCCCCGAGAACAGTGTGGGGAGGGCATCTCTGTTGCTGCCGCACATGTAGTGTGAGAAATCTGCATCTGGTGTTTTGTTGTTGTTTATTTTTTAACACATCTGAGATTGCTAGTGAATTGGAACTGAGTTTTCATTTAAATATATGTATCTTAAAACTATCAAGAGGCAGTATATGTTACAATTAAAGTATTTTATATTTTATGTAGCACCAATACATTATTATGAAGTCAGTACAGAGAGATTGGCATCTTAGTATTTTCTGAGGAAGAGAACAGCCAAAGAGTAAGAATGACTGTGCCTTCCTTTGCTTTAGTCTCTAACAAGACTGAGCCTCCCCTGTTCTGTCGTACGTAGTATCATTCATTCTCTCTGTGTATGTGTATATATATGTTTATATATTGCAACACTTATATCAACATATATATATGAATATTCTATGTACAGAGTATATGTTTTGGAGATCATTAAAATGCTTTCTGTGGCTTCTTAATTTTCTAATAGCAAAACAAATTATATTTCAGACAAATTATTTTCTTAAATATATGAAGTACAATTTCATGTGCTTATTCCTGACTCTAAAATGGTCTACATCTTATGTACTCTGTAGATTGTATTTGTTTTGTATGTAACTTTTCTAAGAATACTGGAATGGTGAAGAGCAATACATCTTTGGATACAGTGTATTTGAACTAATACATTAATACTTTAGTAAATTCTTTTGAATCCTGCTTTGCTTACGTGTTTACTAGACTGTTGTGGCAGTATCTCGCTACAACTACAGGTATCTAAACATTTTCCACTTATGCTATATTTTAATGGGAAAAATAGCTTATAATAGGTCAAGAATGAGTTTAAAATTTAATTTCTTGATATTACAAGTGTCAACCCTTGATAAGAAGCCACTTGAGATGAGCTGAAGGGATGCGGAGATAACCCTGAGATGCTCACTGTGGCACTGCAGGGTGCTGGCTCTGCTGCTCCTGGCGGCCTCCTCACCTGCACGCAGTAGCCAGGTGGCCCTGAGCACAGCCCTCCTTAGGCGCAGAGATTCCCTGTTCACTTGACGCAAATAGGTCTCCCCTCTTTGTGTTTAGTGCTGCTTTTAGGGTCGTATGTTAGCCGTTCTGCCCTTTGAAATGCAGCGAGGTTCGCTGAATGCCTCACATGTTTGCTCTCGCAG
Seq C2 exon
GGGACAAACCAGCAGATCAAGGCCCACGAGGCCAGCTCCGCCGTGCAGCACGTCAACCTGCTGAAGGAGTGGAGCAACTCGCTCGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323-TRAF3:NM_145725:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF086146=ATG16=PU(6.2=28.0),PF041569=IncA=FE(12.4=100),PF101744=Cast=PU(0.7=4.0)
A:
NA
C2:
PF0217613=zf-TRAF=PD(1.8=3.2),PF086146=ATG16=FE(22.2=100),PF127182=Tropomyosin_1=PU(10.3=48.4),PF0149614=V_ATPase_I=PU(7.7=45.2),PF0205011=FliJ=PU(5.1=16.1),PF101744=Cast=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)