HsaINT0171697 @ hg38
Intron Retention
Gene
ENSG00000131323 | TRAF3
Description
TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr14:102889560-102891417:+
Coord C1 exon
chr14:102889560-102889634
Coord A exon
chr14:102889635-102891324
Coord C2 exon
chr14:102891325-102891417
Length
1690 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TCACATGTTTGCTCTCGCAGGGG
3' ss Score
9.5
Exon sequences
Seq C1 exon
TTGAGTGCACACTTGTCAGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAG
Seq A exon
GTCAGTATCCGACATTTGTCCTTCCCAGTCACTGACATTCTGCCATGAGAGAAAGTTATTATATTAACATTTTAACATGCAAGCTCTGGACTCCTTATTCTTTGTCATGAAACTGAAACACCCTGTTGCATGGGTGACGAAAGCCACATGCAGCAGGTGGGATGCTCGCTTTCCAGTTGGTGGTGCTTTGAGACTTCAGGGAGACACTGTGCTGAGGTGGAAGTTAATACATTAAGAGAAGTACTACATCCAAAACCAGCTAGTAATGCAACAGGTAGACTTGACATTTGGTGGGGTTTTCAGATAGATTGTTACGGAAATTTTAGCAGTTACCTGAATATAAGCGAATATCAAACTGAGCATAGTTTCAACAGCGTGTGTGTCAGTACACAGCCATAACGATCACACACGTGTGTATCCATAAATGCATTTGATGTACATGTCTGTGCTGACTCTGACCCCAACGGGGGACAGACGCAAAATGGAGCACAGCTCATAGAGAGCACACCTCCCCGAGAACAGTGTGGGGAGGGCATCTCTGTTGCTGCCGCACATGTAGTGTGAGAAATCTGCATCTGGTGTTTTGTTGTTGTTTATTTTTTAACACATCTGAGATTGCTAGTGAATTGGAACTGAGTTTTCATTTAAATATATGTATCTTAAAACTATCAAGAGGCAGTATATGTTACAATTAAAGTATTTTATATTTTATGTAGCACCAATACATTATTATGAAGTCAGTACAGAGAGATTGGCATCTTAGTATTTTCTGAGGAAGAGAACAGCCAAAGAGTAAGAATGACTGTGCCTTCCTTTGCTTTAGTCTCTAACAAGACTGAGCCTCCCCTGTTCTGTCGTACGTAGTATCATTCATTCTCTCTGTGTATGTGTATATATATGTTTATATATTGCAACACTTATATCAACATATATATATGAATATTCTATGTACAGAGTATATGTTTTGGAGATCATTAAAATGCTTTCTGTGGCTTCTTAATTTTCTAATAGCAAAACAAATTATATTTCAGACAAATTATTTTCTTAAATATATGAAGTACAATTTCATGTGCTTATTCCTGACTCTAAAATGGTCTACATCTTATGTACTCTGTAGATTGTATTTGTTTTGTATGTAACTTTTCTAAGAATACTGGAATGGTGAAGAGCAATACATCTTTGGATACAGTGTATTTGAACTAATACATTAATACTTTAGTAAATTCTTTTGAATCCTGCTTTGCTTACGTGTTTACTAGACTGTTGTGGCAGTATCTCGCTACAACTACAGGTATCTAAACATTTTCCACTTATGCTATATTTTAATGGGAAAAATAGCTTATAATAGGTCAAGAATGAGTTTAAAATTTAATTTCTTGATATTACAAGTGTCAACCCTTGATAAGAAGCCACTTGAGATGAGCTGAAGGGATGCGGAGATAACCCTGAGATGCTCACTGTGGCACTGCAGGGTGCTGGCTCTGCTGCTCCTGGCGGCCTCCTCACCTGCACGCAGTAGCCAGGTGGCCCTGAGCACAGCCCTCCTTAGGCGCAGAGATTCCCTGTTCACTTGACGCAAATAGGTCTCCCCTCTTTGTGTTTAGTGCTGCTTTTAGGGTCGTATGTTAGCCGTTCTGCCCTTTGAAATGCAGCGAGGTTCGCTGAATGCCTCACATGTTTGCTCTCGCAG
Seq C2 exon
GGGACAAACCAGCAGATCAAGGCCCACGAGGCCAGCTCCGCCGTGCAGCACGTCAACCTGCTGAAGGAGTGGAGCAACTCGCTCGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323:ENST00000560371:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0314511=Sina=FE(36.9=100)
A:
NA
C2:
PF0217613=zf-TRAF=PD(1.8=3.2),PF086146=ATG16=FE(22.2=100),PF101744=Cast=FE(19.5=100),PF0149614=V_ATPase_I=PU(7.7=45.2),PF0205011=FliJ=PU(5.1=16.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains