HsaINT0174074 @ hg38
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127726970-127727465:+
Coord C1 exon
chr9:127726970-127727112
Coord A exon
chr9:127727113-127727269
Coord C2 exon
chr9:127727270-127727465
Length
157 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
3' ss Seq
TGGGGGGTATCGTTTGGCAGGAT
3' ss Score
4.59
Exon sequences
Seq C1 exon
CTGTCCCTGCTGATGACCAACCTCTTCCCGGGCATGTCGGTGGAGGAGGTGCTTAGCACCCAGATAGCCCACCTGGCCAGGCTGCAGCTGGAGCAGATGGTGGAGGGCAGCCTGCAGGCCGGCAGCCCACAAGGCATTGTGGG
Seq A exon
GTAAGCCCTGGAGCAAGGGGCACAGGCCAGGGCTGGGGAATGGCTGCAGCTCCAGGCTCCTCTGGCTCCAGCTGCATGACGGGGCCGTTGTCTAGTCCTTGGAGAGACCAGCATGGGCCAGGGAGACTGACAATACCTGGGGGGTATCGTTTGGCAG
Seq C2 exon
GATGCTTAAACGGCACGAGTTGGAGCGCCAGAAGGCCTTGGCCCTGCAGCACTCATGGAAGCAGGGGGAGCCTTTGATTGCGACCTCCGAGGAGCTGAAGGCCACCCCTGAGATTCCGCAGGTAAAACCGGGAAGCTCAGAGGGAGAGGCTGAGGCCCCTGAGGAGGAGGAAGAAAAGGAGAAGGAGAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094:ENST00000373289:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCTGCTGATGACCAAC
R:
AATCTCAGGGGTGGCCTTCAG
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains