RnoINT0157496 @ rn6
Intron Retention
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11803714-11804141:-
Coord C1 exon
chr3:11803999-11804141
Coord A exon
chr3:11803841-11803998
Coord C2 exon
chr3:11803714-11803840
Length
158 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGC
5' ss Score
4.36
3' ss Seq
CTGGGACCATAACTTGATAGGCA
3' ss Score
1.61
Exon sequences
Seq C1 exon
ATGGCTGCAATGATGAACACCCTTTTTCCTGGCATGACTGTGGAGGGCGCCCTTAAGAGCCGAGTGGCTGAACTGGCTAGGCTCCAGCTAACCCGGATGATAGAAAACGGGCCAAGGAGAAACTACCCTCAAAGCATTGTGTT
Seq A exon
GTAAGCTTGTGTGCGGGACAGGGACTTCTGGTAGGAACTGGTGGGGACTCGGAACGCCTCTGGTCCAGTTGCCTGGTAGGGCTTGCACTGCCTGGTCTCTGGGGACAGCAGTTCAGATTCCAGAGACTGATCGGGGCCCTGGGACCATAACTTGATAG
Seq C2 exon
GCAACGGTTAATGGAACGCCAGAAAGCCCAAGCCATGGTGAGGTCCTGGAAGAAGGAGCCTCCTGAGATCCCCAAAGAAGAGGAAGTGACTATTTTCCAGGCTCCGGAGGTGGCAAAGGGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650:ENSRNOT00000071233:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.535
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAATGATGAACACCCT
R:
ACCTCCGGAGCCTGGAAAATA
Band lengths:
252-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]