HsaINT0174080 @ hg38
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127720078-127720395:+
Coord C1 exon
chr9:127720078-127720178
Coord A exon
chr9:127720179-127720265
Coord C2 exon
chr9:127720266-127720395
Length
87 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCTGTGCCCTCTGCCCTCAGCAT
3' ss Score
10.01
Exon sequences
Seq C1 exon
GGACAATGCCTTTTTGAGCAGTGTGCCTTCCTGGATGCCCTGAATGTCTTCTCACATGCTGCTGAGCTCCAGCCTGAGAAACCATGCTTCCGTTACCGATG
Seq A exon
GTGAGTGCCCCTGCCAGCCCCTTCTCCCAGCACCCACTTCCTGCCGCCCCACCCGGGAAACGAGCACTCTGTGCCCTCTGCCCTCAG
Seq C2 exon
CATGGCCTGTCTCCTGGCCCTCAAGCAGCATCAGGCCTGCCTCACGCTCATCACCAACGAGCTGAAGCAGGACACCACCAACGCCGATGTCTACATCTTCCGGGCCAGACTCTACAACTTTCTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094:ENST00000373289:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGATGCCCTGAATGTCT
R:
TGGCCCGGAAGATGTAGACAT
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains