HsaINT0174195 @ hg38
Intron Retention
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165941027-165943341:-
Coord C1 exon
chr2:165943219-165943341
Coord A exon
chr2:165941185-165943218
Coord C2 exon
chr2:165941027-165941184
Length
2034 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTTTTTTCCCTTCCATTAGGCA
3' ss Score
9.91
Exon sequences
Seq C1 exon
GGACACGTTTTGAAAGCATGGCTTGATATTACAAGAGGAAAAGAGCCTTACACTAAAAAAGCACTGAAGTATTTTGAAGAGGGACTCCAAGATGGGAATGATACTTTTGCTCTGCTGGGTAAG
Seq A exon
GTGAGTTGGAGTTAGGGTAAATAAATCATGTTTCAAAATATATTCATAATATATTTGAAACCTGACAAAACCAAGTAGCTCAAAAAAGTTGATAATTTTCATGATACTGTTGTCAGCTCACAGCTGTAAGGTAGACTGGCATTTGTGTAGGACAATGAGCAATACACTAGAGAAATGTATTCCCTGCCAGAGTTCCTGAATCCTGGATCAGCTGTAACTGTTAATTGTTGTTGTTGTTTTGGTTCACACATTCTTTCCTCAGCATTTATTATGTGTCTTATGTATGTGAGGCATCCCTCTAGATATTAGAAACCCTGAGCAAGAGAAAACCTCTTGTTTTTATGGAGCTTATATCCTACTGATGGAGGCAGACAATAAACAAAATAAGTAAGTTATATGGTATATTAGAAGGTGATAAGTATAATGGAAAATACAGCTGGAAAAGCTAGGGCATGAACTTCCAGTTTTACATGAAGTGGTCGGAGAAAGTGACATTTGAGCAAACACATTTATGGAGGTGAGGGTTAAAGCCCTGCAGGCATCTGGGGAAAGTATTTCAAATAGAGGAGATGATGAGTTCAGGTACCCTAAGGTGTATTCAGGGCTAGCAAGGAGGCCAAAGTGGGTTGAGTAAAGAGAACAGAAGTGAAGGCCTGAGGAAGAAAGGTGGGATGGGGGTGAGGAGGAGTGGTGGGCCTGGCCTGTTCTGTAAGGCCTTTGGCTTCTACCTTCTATTAGAGAGACAGGCAGCCAATACAAAGTTTTGAACAGAGAAATAACATGATCGGACATACATTTTGAGGGATGAGCAATTGAAGGAGTCATTAGAACTTACTGATGGATGGAAATATTTAAGTAGGACCCTTTCTTCAATCCCCATTGATGCTATCTAAATGCCTTAATTTTTTTTTGACTCAGCAAAAAGAAATTATATGTTGGGAACAAGTCTGCTAGATAAGCAGTAATTTGGAGGGATAAAAAAGAAGGGGAGAGGATTCATGTCTTGACTTTTGTTAATGTCTCCACATCACTTTTCCTGTCACTTTGTGTGGACAGTAAGCCTGTTGAACATCTTGTGTTCAGGCCCACTACCCTCAAGTTTTACCTAATAGCACTGCTGAAGAAATTGGCCATATACTTTTCTTGATCATTTTCCTTCTCTTAAAGAAAAGCTAGTTGATAAAAATTTGCCTCATCATCTCTTTTTAATGTACTAACTATATTTATAGCTTTATTTTTTCTGACTATGAGATACATGAACATAGTAAAACTTTTTTTCAGAAAATACAATAACATCTGAATGAGAAAATGAGCATCACCATTGGAAATAACCAGTTAAACTATTATATATAATATCTCTTCATGTCAGTAAATCTACGTCTACAAATTTATATCATCATTTTTAATGATTACTTAACATTTTATTAAATTAGATATACTATAATTTTCTCCTCTAGGTACATTTGGGATTATTTTATACATAAACAATTCTGCCATAAATATCATCTATATACTTCCTTGTGGTCTTGTCCAATTATTTCCTTCAGATAATTCATAGAAGTGAAAAATGTTGAAGTAGAGGGATTTGTTTGAACTGTATTTTGCTTGTTCTTTAAAATCATATATTCTTTAACCTGAAAATAATTTCTTAAAAAAGATGCAAAATTTCTAAAATTTCTTAAAATTTTAGATGCTACTTGAAAATTTCCTGGAAACATTTTAATCTAAAAAGATAATTTTGTTTTAAATGGAAACATTATTTTATGGTATTTCCGAGAACATTTTAAAAAATTTTATCCTTTAATCATGTTTTTCAGCCATTTAAAAGTAAATTTTAAAACACAATAGCTTATATAATGTATTTGTATTATTCTGTGATGTTTTAAAATTTTGTTTTGACAAAAACTTAAAAAGTGATAACTGCTCCTCACAGAAAAGTAAGTATTAAACGCTCATACTCTGCCTGCTCTGCGTTATGAGAACTTTGATATGAAAGATCACAGTTTGGATATCACTTTTTTTCCCTTCCATTAG
Seq C2 exon
GCACAATGCCTTGAGATGCGCCAGAATTATTCAGGTGCCCTGGAGACTGTGAACCAGATAATCGTGAATTTTCCGAGCTTCCTTCCTGCTTTTGTTAAGAAAATGAAATTACAACTAGCCTTGCAGGATTGGGACCAGACAGTTGAGACAGCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607:ENST00000243344:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(43.9=70.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains