GgaINT0048235 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19157864-19159669:+
Coord C1 exon
chr7:19157864-19157986
Coord A exon
chr7:19157987-19159511
Coord C2 exon
chr7:19159512-19159669
Length
1525 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
ATTTTTCTTCCTTCCATTAGGCA
3' ss Score
9.19
Exon sequences
Seq C1 exon
GGATTGATTCTGAAAGCATGGCTTGATCTCACTTGTGGGAAAGAAACTCATATTAAAAAAGCTTTGAAGTACTTTGATGAAGCGCTTCAGGAAGGGAATGATGTTTTTGCTCTCCTTGGTAAA
Seq A exon
GTATGTTTACTTTGATTTTAGCACTTTCTAAATGTGTTGTTGCACCTTGTTAATAATTAGAGCTTGTTAATGATTAGAGTGTGTGCAGGGAGTACAGATACAGCTCAGTCGTATTCTTTTTGCTCTGTTGACTGGAGTATTGTTTTAAAAGCGTTCAGTAGATTTTAGAAGAAATGGTGTGAGTCACGCAATTACTTGAGGAATATAAAAGCTACCAAACAATTTGAGTTCTAGAACAATAAAAATAGCTGACATTGCATTTCTTGTGGTAAATAGCCTACTTGAAATAGTAGCTAATTGTACTGAGTAGCCAGGGTTCATAAGAATTTCACTTTCTGTCCTGATGAAGGTGAAGACAGAAGGACAGGCAGCACAGTGGTAAATAAGCAGTAACTGTGTTCAAGTGATGAGTTTTTTCTTTGAGTAAGATTAGCTTCCAAGTGACACCTTAAGGCCCAATAGGCACCAGTGTAAGAAAGGATGGCTACAGAAGAAATAGAGTCAGTCTGAATGTATACTGAAGGTATGGTTTTTAGTATGTGCACAAGAAAAACGTGTTGAATTCATCTATTCATGTGCAAGAAATGAAAACGTGCAGGTCAGCAGAATTTTTCACAGAAGACACTCATCCACGTCATAGAATTGCTATGTGCTGTCTCCAAAAAAAAATGTAGTAATTAAAACACTGCATCTGCAATGTATTTGTCTTATTCTAGTTGTCATTATTGAATTGCAAGTGCTTGTTTTGAACGTGGAATATAGAAGACTAAAGCTCAGAACAGTGCACAAAGTGTTTGGGTACACGTGTGTACGTGGCTGTACGTGTTCAATTACCGGTACACTGCAAATTGTTATTGCATTTAGATTTTAGGCAGATAATTGTCTTGCTGTTATTTAAGAAACTGTGGTAGCTTTTATGTTTGCACTGTGGCTCTCAAAAATATTAAATCAAATTATATGCATTCAATCGCCTGGAATTCAGTACGTAAATTTTAAGCTCCAAAGTAAAGTTGAGGACTTGAGCCCTAAATTGATTTCTACTCAGCGGAACTCATCTTAAACTGTGATACTGCTTCTGATGCACTCTTTTATTTAGAGTGCTGTACAAAGTACTTAAATACTGTTAAGTGTGGTGACAACGGTGACCTACGGGGACTGAAGATTTTGGTATATATCTCAAGTTCTGAATAAATTGTGTGATCTGTTGGTTATGTTCAATATCCTGAAATGTTGAAGTGGTTTAAACAAAAGCTGTCAAAAACTATTAAAACAGTGCCATCCTTCAGCTACATCTCCCTAGCTTTTTTCTTGTTAATGCTGTGCTGAAGTTAAACTTGAAATAGAGGTGCTTACCCCATACAGTATTTTACACTTCACTTTTCATATTTCTTTAGTATGATAATTCTAGCTGATGCTGAAGTATAACTCATATTGGAAAAATGGTTTCTGTACGGAAGGAAGTTCTGTATCTTTCTACTTCTGTGAGTGCACAGGCTTTTGATGCAATTTTTCTTCCTTCCATTAG
Seq C2 exon
GCACAGTATTTTGAGATCCGACAGAATTATTCAGGAGCTCTGGAAATGGTGAACCAGATAATTGCAAACTTTCCAAACTTCATTCCTGCTTTCATAAAGAAAATGAAGCTGCAACTAGCCTTGCAGGACTGGGAGCAGGCAGTTGAAACTGCACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGATTCTGAAAGCATGGCT
R:
GTTTCAACTGCCTGCTCCCAG
Band lengths:
272-1797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]